| 2006 | 1 | | 1 | FrRnd | 1 | Royals | Luke Hochevar (minors) | 0.9 | 151 | 16 | 0 | .063 | .125 | 151 | 38 | 60 | 5.30 | 1.39 | 1 | | |
| 2006 | 1 | | 2 | FrRnd | 2 | Rockies | Greg Reynolds (minors) | -1.3 | 27 | 23 | 0 | .174 | .469 | 27 | 5 | 8 | 7.47 | 1.69 | 0 | 4Yr | Stanford University (Palo Alto, CA) |
| 2006 | 1 | | 4 | FrRnd | 4 | Pirates | Brad Lincoln (minors) | 0.4 | 90 | 38 | 0 | .237 | .520 | 88 | 8 | 10 | 4.71 | 1.37 | 1 | 4Yr | University of Houston (Houston, TX) |
| 2006 | 1 | | 5 | FrRnd | 5 | Mariners | Brandon Morrow (minors) | 7.5 | 218 | 12 | 0 | .000 | .000 | 218 | 41 | 40 | 4.22 | 1.34 | 16 | 4Yr | University of California, Berkeley (Berkeley, CA) |
| 2006 | 1 | | 10 | FrRnd | 10 | Giants | Tim Lincecum (minors) | 22.7 | 204 | 375 | 0 | .112 | .294 | 203 | 83 | 63 | 3.39 | 1.24 | 0 | 4Yr | University of Washington (Seattle, WA) |
| 2006 | 1 | | 11 | FrRnd | 11 | Diamondbacks | Max Scherzer (minors) | 14.0 | 158 | 74 | 0 | .162 | .394 | 156 | 62 | 42 | 3.80 | 1.26 | 0 | 4Yr | University of Missouri Columbia (Columbia, MO) |
| 2006 | 1 | | 16 | FrRnd | 16 | Brewers | Jeremy Jeffress (minors) | -0.5 | 38 | 0 | 0 | | | 38 | 2 | 1 | 4.99 | 1.82 | 1 | HS | Halifax County HS (South Boston, VA) |
| 2006 | 1 | | 18 | FrRnd | 18 | Phillies via Mets | *Kyle Drabek (minors) | -0.2 | 34 | 2 | 0 | .000 | .000 | 34 | 8 | 15 | 5.34 | 1.67 | 0 | HS | The Woodlands HS (The Woodlands, TX) |
| 2006 | 1 | | 19 | FrRnd | 19 | Marlins | Brett Sinkbeil (minors) | -0.2 | 3 | 0 | 0 | | | 3 | 0 | 0 | 13.50 | 3.50 | 0 | 4Yr | Missouri State University (Springfield, MO) |
| 2006 | 1 | | 21 | FrRnd | 21 | Yankees via Phillies | *Ian Kennedy (minors) | 10.0 | 129 | 193 | 0 | .145 | .424 | 126 | 49 | 34 | 3.92 | 1.24 | 0 | 4Yr | University of Southern California (Los Angeles, CA) |
| 2006 | 1 | | 22 | FrRnd | 22 | Nationals via Athletics | *Colton Willems (minors) | | | | | | | | | | | | | HS | John Carroll Catholic HS (Fort Pierce, FL) |
| 2006 | 1 | | 26 | FrRnd | 26 | Dodgers via Angels | *Bryan Morris (minors) | 0.5 | 24 | 3 | 0 | .000 | .000 | 24 | 3 | 2 | 2.27 | 0.90 | 0 | JC | Motlow State Community College (Lynchburg, TN) |
| 2006 | 1 | | 28 | FrRnd | 28 | Red Sox via Yankees | *Daniel Bard (minors) | 4.3 | 211 | 2 | 0 | .000 | .000 | 211 | 10 | 19 | 3.67 | 1.22 | 5 | 4Yr | University of North Carolina at Chapel Hill (Chapel Hill, NC) |
| 2006 | 1 | | 29 | FrRnd | 29 | White Sox | Kyle McCulloch (minors) | | | | | | | | | | | | | 4Yr | University of Texas at Austin (Austin, TX) |
| 2006 | 1 | | 30 | FrRnd | 30 | Cardinals | Adam Ottavino (minors) | 1.6 | 81 | 22 | 0 | .045 | .132 | 80 | 5 | 4 | 4.42 | 1.45 | 0 | 4Yr | Northeastern University (Boston, MA) |
| 2006 | 1s | | 32 | FrRnd | 32 | Orioles | *Pedro Beato (minors) | -1.1 | 72 | 0 | 0 | | | 72 | 3 | 1 | 4.61 | 1.28 | 0 | JC | St. Petersburg College (St. Petersburg, FL) |
| 2006 | 1s | | 34 | FrRnd | 34 | Diamondbacks | *Brooks Brown (minors) | | | | | | | | | | | | | 4Yr | University of Georgia (Athens, GA) |
| 2006 | 1s | | 38 | FrRnd | 38 | Braves | *Cory Rasmus (minors) | -0.2 | 3 | 0 | 0 | | | 3 | 0 | 0 | 8.10 | 1.65 | 0 | HS | Russell County HS (Seale, AL) |
| 2006 | 1s | | 41 | FrRnd | 41 | Yankees | *Joba Chamberlain (minors) | 7.0 | 231 | 5 | 0 | .000 | .167 | 231 | 21 | 13 | 3.81 | 1.36 | 5 | 4Yr | University of Nebraska at Lincoln (Lincoln, NE) |
| 2006 | 1s | | 42 | FrRnd | 42 | Cardinals | *Chris Perez (minors) | 4.7 | 307 | 1 | 0 | .000 | .000 | 307 | 12 | 19 | 3.29 | 1.20 | 113 | 4Yr | University of Miami (Coral Gables, FL) |
| 2006 | 1s | | 44 | FrRnd | 44 | Red Sox | *Caleb Clay (minors) | | | | | | | | | | | | | HS | Cullman HS (Cullman, AL) |
| 2006 | 2 | | 47 | FrRnd | 3 | Devil Rays | Josh Butler (minors) | -0.1 | 3 | 0 | 0 | | | 3 | 0 | 0 | 9.00 | 3.25 | 0 | 4Yr | University of San Diego (San Diego, CA) |
| 2006 | 2 | | 49 | FrRnd | 5 | Mariners | Chris Tillman (minors) | 3.4 | 65 | 2 | 0 | .000 | .000 | 65 | 23 | 20 | 4.46 | 1.38 | 0 | HS | Fountain Valley HS (Fountain Valley, CA) |
| 2006 | 2 | | 52 | FrRnd | 8 | Reds | Sean Watson (minors) | | | | | | | | | | | | | 4Yr | University of Tennessee (Knoxville, TN) |
| 2006 | 2 | | 56 | FrRnd | 12 | Indians via Rangers | *Steven Wright (minors) | -0.1 | 1 | 0 | | | | 1 | 0 | 0 | 12.27 | 2.73 | 0 | 4Yr | University of Hawaii at Manoa (Honolulu, HI) |
| 2006 | 2 | | 59 | FrRnd | 15 | Nationals | Sean Black (minors) | | | | | | | | | | | | | HS | Lenape HS (Medford, NJ) |
| 2006 | 2 | | 62 | FrRnd | 18 | Mets | Kevin Mulvey (minors) | -0.6 | 10 | 7 | 0 | .143 | .286 | 10 | 0 | 3 | 7.90 | 1.76 | 0 | 4Yr | Villanova University (Villanova, PA) |
| 2006 | 2 | | 65 | FrRnd | 21 | Phillies | Drew Carpenter (minors) | -0.8 | 23 | 4 | 0 | .000 | .000 | 23 | 1 | 1 | 7.56 | 1.83 | 0 | 4Yr | California State University Long Beach (Long Beach, CA) |
| 2006 | 2 | | 66 | FrRnd | 22 | Athletics | Trevor Cahill (minors) | 10.9 | 142 | 104 | 0 | .106 | .249 | 142 | 56 | 55 | 3.88 | 1.31 | 0 | HS | Vista HS (Vista, CA) |
| 2006 | 2 | | 67 | FrRnd | 23 | Astros | Sergio Perez (minors) | | | | | | | | | | | | | 4Yr | University of Tampa (Tampa, FL) |
| 2006 | 2 | | 68 | FrRnd | 24 | Braves | Dustin Evans (minors) | | | | | | | | | | | | | 4Yr | Georgia Southern University (Statesboro, GA) |
| 2006 | 2 | | 71 | FrRnd | 27 | Red Sox | Justin Masterson (minors) | 9.3 | 195 | 17 | 0 | .118 | .235 | 195 | 47 | 58 | 4.10 | 1.37 | 0 | 4Yr | San Diego State University (San Diego, CA) |
| 2006 | 2 | | 73 | FrRnd | 29 | White Sox | Matt Long (minors) | | | | | | | | | | | | | 4Yr | Miami University of Ohio (Oxford, OH) |
| 2006 | 3 | | 77 | FrRnd | 1 | Royals | Blake Wood (minors) | 0.8 | 106 | 1 | 0 | .000 | .000 | 106 | 6 | 6 | 4.30 | 1.46 | 1 | 4Yr | Georgia Institute of Technology (Atlanta, GA) |
| 2006 | 3 | | 79 | FrRnd | 3 | Devil Rays | Nicholas Fuller (minors) | | | | | | | | | | | | | HS | Kell HS (Marietta, GA) |
| 2006 | 3 | | 86 | FrRnd | 10 | Diamondbacks via Giants | *Dallas Buck (minors) | | | | | | | | | | | | | 4Yr | Oregon State University (Corvallis, OR) |
| 2006 | 3 | | 94 | FrRnd | 18 | Mets | Joe Smith (minors) | 6.5 | 396 | 2 | 0 | .000 | .000 | 396 | 24 | 14 | 2.99 | 1.24 | 1 | 4Yr | Wright State University (Dayton, OH) |
| 2006 | 3 | | 103 | FrRnd | 27 | Red Sox | Bryce Cox (minors) | | | | | | | | | | | | | 4Yr | Rice University (Houston, TX) |
| 2006 | 3 | | 104 | FrRnd | 28 | Yankees | Zach McAllister (minors) | -0.2 | 37 | 2 | 0 | .000 | .000 | 37 | 10 | 14 | 4.14 | 1.41 | 0 | HS | Illinois Valley Central HS (Chillicothe, IL) |
| 2006 | 3 | | 106 | FrRnd | 30 | Cardinals | Gary Daley (minors) | | | | | | | | | | | | | 4Yr | California Polytechnic State University, San Luis Obispo (San Luis Obispo, CA) |
| 2006 | 4 | | 108 | FrRnd | 2 | Rockies | Craig Baker (minors) | | | | | | | | | | | | | 4Yr | California State University Northridge (Los Angeles, CA) |
| 2006 | 4 | | 109 | FrRnd | 3 | Devil Rays | Alex Cobb (minors) | 3.6 | 45 | 3 | 0 | .000 | .000 | 45 | 20 | 13 | 3.60 | 1.24 | 0 | HS | Vero Beach HS (Vero Beach, FL) |
| 2006 | 4 | | 110 | FrRnd | 4 | Pirates | Jared Hughes (minors) | 0.6 | 93 | 1 | 0 | .000 | .000 | 93 | 3 | 5 | 3.32 | 1.22 | 2 | 4Yr | California State University Long Beach (Long Beach, CA) |
| 2006 | 4 | | 111 | FrRnd | 5 | Mariners | Ricky Orta (minors) | | | | | | | | | | | | | 4Yr | University of Miami (Coral Gables, FL) |
| 2006 | 4 | | 117 | FrRnd | 11 | Diamondbacks | Bryant Thompson (minors) | | | | | | | | | | | | | JC | Pensacola Junior College (Pensacola, FL) |
| 2006 | 4 | | 120 | FrRnd | 14 | Blue Jays | Brandon Magee (minors) | | | | | | | | | | | | | 4Yr | Bradley University (Peoria, IL) |
| 2006 | 4 | | 122 | FrRnd | 16 | Brewers | Evan Anundsen (minors) | | | | | | | | | | | | | HS | Columbine HS (Littleton, CO) |
| 2006 | 4 | | 124 | FrRnd | 18 | Mets | John Holdzkom (minors) | | | | | | | | | | | | | JC | Salt Lake Community College (Salt Lake City, UT) |
| 2006 | 4 | | 125 | FrRnd | 19 | Marlins | Hector Correa (minors) | | | | | | | | | | | | | HS | Lorenzo Coballes Gandia (Hatillo, PR) |
| 2006 | 4 | | 128 | FrRnd | 22 | Athletics | Chad Lee (minors) | | | | | | | | | | | | | JC | Barton County Community College (Great Bend, KS) |
| 2006 | 4 | | 136 | FrRnd | 30 | Cardinals | Eddie Degerman (minors) | | | | | | | | | | | | | 4Yr | Rice University (Houston, TX) |
| 2006 | 5 | | 137 | FrRnd | 1 | Royals | Jason Godin (minors) | | | | | | | | | | | | | 4Yr | Old Dominion University (Norfolk, VA) |
| 2006 | 5 | | 140 | FrRnd | 4 | Pirates | Pat Bresnehan (minors) | | | | | | | | | | | | | 4Yr | Arizona State University (Tempe, AZ) |
| 2006 | 5 | | 141 | FrRnd | 5 | Mariners | Nathan Adcock (minors) | 0.7 | 36 | 1 | 0 | .000 | .000 | 36 | 1 | 4 | 3.79 | 1.46 | 1 | HS | North Hardin HS (Radcliff, KY) |
| 2006 | 5 | | 143 | FrRnd | 7 | Dodgers | Kyle Smit (minors) | | | | | | | | | | | | | HS | Spanish Springs HS (Spanish Springs, NV) |
| 2006 | 5 | | 144 | FrRnd | 8 | Reds | Josh Ravin (minors) | | | | | | | | | | | | | HS | Chatsworth HS (Chatsworth, CA) |
| 2006 | 5 | | 147 | FrRnd | 11 | Diamondbacks | Hector Ambriz (minors) | -0.8 | 85 | 0 | 0 | | | 85 | 2 | 6 | 5.06 | 1.60 | 2 | 4Yr | University of California, Los Angeles (Los Angeles, CA) |
| 2006 | 5 | | 149 | FrRnd | 13 | Cubs | Jeff Samardzija (minors) | 4.4 | 174 | 88 | 2 | .102 | .350 | 171 | 25 | 29 | 3.94 | 1.32 | 1 | 4Yr | University of Notre Dame (South Bend, IN) |
| 2006 | 5 | | 153 | FrRnd | 17 | Padres | Andrew Underwood (minors) | | | | | | | | | | | | | 4Yr | California State University Fresno (Fresno, CA) |
| 2006 | 5 | | 154 | FrRnd | 18 | Mets | Stephen Holmes (minors) | | | | | | | | | | | | | 4Yr | University of Rhode Island (Kingston, RI) |
| 2006 | 5 | | 159 | FrRnd | 23 | Astros | Casey Hudspeth (minors) | | | | | | | | | | | | | 4Yr | University of South Florida (Tampa, FL) |
| 2006 | 5 | | 161 | FrRnd | 25 | Indians | Chris Archer (minors) | -0.2 | 12 | 3 | 0 | .000 | .000 | 10 | 2 | 6 | 4.78 | 1.39 | 0 | HS | Clayton HS (Clayton, NC) |
| 2006 | 5 | | 162 | FrRnd | 26 | Angels | David Herndon (minors) | 0.5 | 97 | 7 | 0 | .000 | .000 | 97 | 2 | 8 | 3.85 | 1.48 | 1 | JC | Gulf Coast Community College (Panama City, FL) |
| 2006 | 5 | | 164 | FrRnd | 28 | Yankees | George Kontos (minors) | 0.0 | 82 | 1 | 0 | .000 | .000 | 82 | 4 | 2 | 3.74 | 1.21 | 0 | 4Yr | Northwestern University (Evanston, IL) |
| 2006 | 6 | | 167 | FrRnd | 1 | Royals | Harold Mozingo (minors) | | | | | | | | | | | | | 4Yr | Virginia Commonwealth University (Richmond, VA) |
| 2006 | 6 | | 174 | FrRnd | 8 | Reds | Jordan Smith (minors) | -0.5 | 54 | 5 | 0 | .000 | .000 | 54 | 3 | 2 | 4.94 | 1.55 | 1 | JC | College of Southern Nevada (Henderson, NV) |
| 2006 | 6 | | 175 | FrRnd | 9 | Orioles | Jason Berken (minors) | -0.0 | 110 | 6 | 0 | .000 | .000 | 110 | 10 | 20 | 5.36 | 1.65 | 0 | 4Yr | Clemson University (Clemson, SC) |
| 2006 | 6 | | 178 | FrRnd | 12 | Rangers | Jake Brigham (minors) | | | | | | | | | | | | | HS | Central Florida Christian Academy (Orlando, FL) |
| 2006 | 6 | | 181 | FrRnd | 15 | Nationals | Zech Zinicola (minors) | | | | | | | | | | | | | 4Yr | Arizona State University (Tempe, AZ) |
| 2006 | 6 | | 183 | FrRnd | 17 | Padres | Tim Bascom (minors) | | | | | | | | | | | | | 4Yr | University of Central Florida (Orlando, FL) |
| 2006 | 6 | | 184 | FrRnd | 18 | Mets | Scott Schafer (minors) | | | | | | | | | | | | | HS | Pasadena Memorial HS (Pasadena, TX) |
| 2006 | 6 | | 188 | FrRnd | 22 | Athletics | Andrew Bailey (minors) | 6.4 | 199 | 0 | 0 | | | 199 | 11 | 11 | 2.55 | 1.05 | 89 | 4Yr | Wagner College (Staten Island, NY) |
| 2006 | 6 | | 189 | FrRnd | 23 | Astros | Bud Norris (minors) | 3.3 | 114 | 163 | 0 | .135 | .324 | 113 | 33 | 44 | 4.32 | 1.40 | 0 | 4Yr | California Polytechnic State University, San Luis Obispo (San Luis Obispo, CA) |
| 2006 | 6 | | 190 | FrRnd | 24 | Braves | Steven Figueroa (minors) | | | | | | | | | | | | | HS | Edgewater HS (Orlando, FL) |
| 2006 | 6 | | 191 | FrRnd | 25 | Indians | Austin Creps (minors) | | | | | | | | | | | | | 4Yr | Texas A&M University (College Station, TX) |
| 2006 | 6 | | 195 | FrRnd | 29 | White Sox | Brian Omogrosso (minors) | 0.5 | 28 | 0 | 0 | | | 28 | 0 | 1 | 3.60 | 1.57 | 0 | 4Yr | Indiana State University (Terre Haute, IN) |
| 2006 | 7 | | 199 | FrRnd | 3 | Devil Rays | Ryan Reid (minors) | 0.1 | 4 | 0 | 0 | | | 4 | 0 | 0 | 1.93 | 1.29 | 0 | 4Yr | James Madison University (Harrisonburg, VA) |
| 2006 | 7 | | 201 | FrRnd | 5 | Mariners | Doug Fister (minors) | 12.4 | 111 | 13 | 0 | .308 | .692 | 111 | 36 | 45 | 3.45 | 1.17 | 0 | 4Yr | California State University Fresno (Fresno, CA) |
| 2006 | 7 | | 202 | FrRnd | 6 | Tigers | Jonah Nickerson (minors) | | | | | | | | | | | | | 4Yr | Oregon State University (Corvallis, OR) |
| 2006 | 7 | | 205 | FrRnd | 9 | Orioles | Josh Tamba (minors) | | | | | | | | | | | | | JC | Cypress College (Cypress, CA) |
| 2006 | 7 | | 207 | FrRnd | 11 | Diamondbacks | Daniel Stange (minors) | -0.2 | 4 | 0 | 0 | | | 4 | 0 | 0 | 13.50 | 2.50 | 0 | 4Yr | University of California, Riverside (Riverside, CA) |
| 2006 | 7 | | 211 | FrRnd | 15 | Nationals | Sam Brown (minors) | | | | | | | | | | | | | HS | Millbrook HS (Millbrook, NC) |
| 2006 | 7 | | 215 | FrRnd | 19 | Marlins | Don Czyz (minors) | | | | | | | | | | | | | 4Yr | University of Kansas (Lawrence, KS) |
| 2006 | 7 | | 218 | FrRnd | 22 | Athletics | Mike Leake (minors) | 6.7 | 115 | 197 | 2 | .254 | .608 | 97 | 35 | 25 | 3.98 | 1.31 | 0 | HS | Fallbrook Union HS (Fallbrook, CA) |
| 2006 | 7 | | 224 | FrRnd | 28 | Yankees | Tim Norton (minors) | | | | | | | | | | | | | 4Yr | University of Connecticut (Storrs, CT) |
| 2006 | 7 | | 225 | FrRnd | 29 | White Sox | Justin Cassel (minors) | | | | | | | | | | | | | 4Yr | University of California, Irvine (Irvine, CA) |
| 2006 | 8 | | 227 | FrRnd | 1 | Royals | Josh Cribb (minors) | | | | | | | | | | | | | 4Yr | Clemson University (Clemson, SC) |
| 2006 | 8 | | 228 | FrRnd | 2 | Rockies | Brandon Hynick (minors) | | | | | | | | | | | | | 4Yr | Birmingham-Southern College (Birmingham, AL) |
| 2006 | 8 | | 229 | FrRnd | 3 | Devil Rays | Tyree Hayes (minors) | | | | | | | | | | | | | HS | Tomball HS (Tomball, TX) |
| 2006 | 8 | | 231 | FrRnd | 5 | Mariners | Steven Richard (minors) | | | | | | | | | | | | | 4Yr | Clemson University (Clemson, SC) |
| 2006 | 8 | | 237 | FrRnd | 11 | Diamondbacks | Chase Christianson (minors) | | | | | | | | | | | | | 4Yr | University of South Alabama (Mobile, AL) |
| 2006 | 8 | | 239 | FrRnd | 13 | Cubs | Billy Muldowney (minors) | | | | | | | | | | | | | 4Yr | University of Pittsburgh (Pittsburgh, PA) |
| 2006 | 8 | | 242 | FrRnd | 16 | Brewers | Shane Hill (minors) | | | | | | | | | | | | | HS | Florida Christian School (Miami, FL) |
| 2006 | 8 | | 244 | FrRnd | 18 | Mets | Nathan Hedrick (minors) | | | | | | | | | | | | | JC | Barton County Community College (Great Bend, KS) |
| 2006 | 8 | | 250 | FrRnd | 24 | Braves | Casey Beck (minors) | | | | | | | | | | | | | JC | San Jacinto College (Pasadena, TX) |
| 2006 | 8 | | 251 | FrRnd | 25 | Indians | Michael Eisenberg (minors) | | | | | | | | | | | | | 4Yr | Marietta College (Marietta, OH) |
| 2006 | 8 | | 254 | FrRnd | 28 | Yankees | Dellin Betances (minors) | -0.0 | 2 | 0 | 0 | | | 2 | 0 | 0 | 6.75 | 2.63 | 0 | HS | Grand Street HS (New York, NY) |
| 2006 | 9 | | 258 | FrRnd | 2 | Rockies | Will Harris (minors) | -0.3 | 35 | 0 | 0 | | | 35 | 1 | 1 | 5.74 | 1.53 | 0 | 4Yr | Louisiana State University (Baton Rouge, LA) |
| 2006 | 9 | | 260 | FrRnd | 4 | Pirates | Steve MacFarland (minors) | | | | | | | | | | | | | 4Yr | Lamar University (Beaumont, TX) |
| 2006 | 9 | | 261 | FrRnd | 5 | Mariners | Justin Souza (minors) | | | | | | | | | | | | | JC | Sacramento City College (Sacramento, CA) |
| 2006 | 9 | | 264 | FrRnd | 8 | Reds | Jeremy Burchett (minors) | | | | | | | | | | | | | 4Yr | University of California, Berkeley (Berkeley, CA) |
| 2006 | 9 | | 268 | FrRnd | 12 | Rangers | Brennan Garr (minors) | | | | | | | | | | | | | 4Yr | University of Northern Colorado (Greeley, CO) |
| 2006 | 9 | | 272 | FrRnd | 16 | Brewers | Shawn Ferguson (minors) | | | | | | | | | | | | | 4Yr | Texas Christian University (Fort Worth, TX) |
| 2006 | 9 | | 277 | FrRnd | 21 | Phillies | Andy Cruse (minors) | | | | | | | | | | | | | 4Yr | University of South Carolina (Columbia, SC) |
| 2006 | 9 | | 280 | FrRnd | 24 | Braves | Tim Gustafson (minors) | | | | | | | | | | | | | 4Yr | Georgia Institute of Technology (Atlanta, GA) |
| 2006 | 9 | | 284 | FrRnd | 28 | Yankees | Mark Melancon (minors) | 2.1 | 183 | 0 | 0 | | | 183 | 11 | 8 | 3.51 | 1.19 | 22 | 4Yr | University of Arizona (Tucson, AZ) |
| 2006 | 9 | | 286 | FrRnd | 30 | Cardinals | Matthew North (minors) | | | | | | | | | | | | | HS | Deer Valley HS (Antioch, CA) |
| 2006 | 10 | | 288 | FrRnd | 2 | Rockies | David Arnold (minors) | | | | | | | | | | | | | JC | Lincoln Trail College (Robinson, IL) |
| 2006 | 10 | | 292 | FrRnd | 6 | Tigers | L.J. Gagnier (minors) | | | | | | | | | | | | | 4Yr | California State University Fullerton (Fullerton, CA) |
| 2006 | 10 | | 294 | FrRnd | 8 | Reds | Josh Roenicke (minors) | 2.3 | 154 | 13 | 0 | .077 | .220 | 154 | 7 | 3 | 3.88 | 1.46 | 1 | 4Yr | University of California, Los Angeles (Los Angeles, CA) |
| 2006 | 10 | | 297 | FrRnd | 11 | Diamondbacks | Tony Barnette (minors) | | | | | | | | | | | | | 4Yr | Arizona State University (Tempe, AZ) |
| 2006 | 10 | | 299 | FrRnd | 13 | Cubs | Jake Renshaw (minors) | | | | | | | | | | | | | JC | Ventura College (Ventura, CA) |
| 2006 | 10 | | 301 | FrRnd | 15 | Nationals | Rico Salmon (minors) | | | | | | | | | | | | | HS | Miami Sunset HS (Miami, FL) |
| 2006 | 10 | | 302 | FrRnd | 16 | Brewers | Mike McClendon (minors) | 0.3 | 35 | 4 | 0 | .250 | .500 | 35 | 5 | 0 | 3.88 | 1.34 | 0 | JC | Seminole Community College (Sanford, FL) |
| 2006 | 10 | | 304 | FrRnd | 18 | Mets | Phillips Orta (minors) | | | | | | | | | | | | | JC | Western Nebraska Community College (Scottsbluff, NE) |
| 2006 | 10 | | 307 | FrRnd | 21 | Phillies | Sam Walls (minors) | | | | | | | | | | | | | 4Yr | North Carolina State University (Raleigh, NC) |
| 2006 | 10 | | 309 | FrRnd | 23 | Astros | Nate Karns (minors) | -0.4 | 3 | 3 | 0 | .000 | .000 | 3 | 0 | 1 | 7.50 | 1.92 | 0 | HS | James W. Martin HS (Arlington, TX) |
| 2006 | 10 | | 310 | FrRnd | 24 | Braves | Kris Medlen (minors) | 7.8 | 137 | 96 | 1 | .125 | .377 | 134 | 22 | 15 | 2.90 | 1.15 | 1 | JC | Santa Ana College (Santa Ana, CA) |
| 2006 | 10 | | 311 | FrRnd | 25 | Indians | Paolo Espino (minors) | | | | | | | | | | | | | HS | The Pendleton School (Bradenton, FL) |
| 2006 | 10 | | 313 | FrRnd | 27 | Red Sox | Kyle Snyder (minors) | | | | | | | | | | | | | HS | Wellington Community HS (Wellington, FL) |
| 2006 | 10 | | 314 | FrRnd | 28 | Yankees | Casey Erickson (minors) | | | | | | | | | | | | | JC | Springfield College in Illinois (Springfield, IL) |
| 2006 | 10 | | 316 | FrRnd | 30 | Cardinals | Blair Erickson (minors) | | | | | | | | | | | | | 4Yr | University of California, Irvine (Irvine, CA) |
| 2006 | 11 | | 317 | FrRnd | 1 | Royals | Tyler Chambliss (minors) | | | | | | | | | | | | | 4Yr | Florida State University (Tallahassee, FL) |
| 2006 | 11 | | 319 | FrRnd | 3 | Devil Rays | Heath Rollins (minors) | | | | | | | | | | | | | 4Yr | Winthrop University (Rock Hill, SC) |
| 2006 | 11 | | 321 | FrRnd | 5 | Mariners | Aaron Solomon (minors) | | | | | | | | | | | | | 4Yr | Cumberland University (Lebanon, TN) |
| 2006 | 11 | | 324 | FrRnd | 8 | Reds | Brandon Rice (minors) | | | | | | | | | | | | | HS | Spalding HS (Spalding, GA) |
| 2006 | 11 | | 326 | FrRnd | 10 | Giants | Gib Hobson (minors) | | | | | | | | | | | | | 4Yr | North Carolina State University (Raleigh, NC) |
| 2006 | 11 | | 327 | FrRnd | 11 | Diamondbacks | Daniel Fournier (minors) | | | | | | | | | | | | | 4Yr | Franklin Pierce University (Rindge, NH) |
| 2006 | 11 | | 328 | FrRnd | 12 | Rangers | Craig Crow (minors) | | | | | | | | | | | | | 4Yr | Rice University (Houston, TX) |
| 2006 | 11 | | 329 | FrRnd | 13 | Cubs | Chris Huseby (minors) | | | | | | | | | | | | | HS | Martin County HS (Stuart, FL) |
| 2006 | 11 | | 331 | FrRnd | 15 | Nationals | Desmond Jones (minors) | | | | | | | | | | | | | JC | Middle Georgia College (Cochran, GA) |
| 2006 | 11 | | 333 | FrRnd | 17 | Padres | Mat Latos (minors) | 10.5 | 120 | 230 | 3 | .122 | .330 | 120 | 47 | 34 | 3.38 | 1.16 | 0 | HS | Coconut Creek HS (Coconut Creek, FL) |
| 2006 | 11 | | 334 | FrRnd | 18 | Mets | Andy Moye (minors) | | | | | | | | | | | | | HS | Alpharetta HS (Alpharetta, GA) |
| 2006 | 11 | | 337 | FrRnd | 21 | Phillies | Jarrod Freeman (minors) | | | | | | | | | | | | | HS | Alta HS (Alta, UT) |
| 2006 | 11 | | 338 | FrRnd | 22 | Athletics | Jason Fernandez (minors) | | | | | | | | | | | | | 4Yr | University of Louisiana at Lafayette (Lafayette, LA) |
| 2006 | 11 | | 340 | FrRnd | 24 | Braves | Mike Mehlich (minors) | | | | | | | | | | | | | HS | Bishop Moore HS (Orlando, FL) |
| 2006 | 11 | | 342 | FrRnd | 26 | Angels | Dave Pellegrine (minors) | | | | | | | | | | | | | 4Yr | Northeastern University (Boston, MA) |
| 2006 | 11 | | 345 | FrRnd | 29 | White Sox | Andrew Urena (minors) | | | | | | | | | | | | | 4Yr | Mercer University (Macon, GA) |
| 2006 | 11 | | 346 | FrRnd | 30 | Cardinals | P.J. Walters (minors) | -1.6 | 37 | 10 | 0 | .000 | .091 | 37 | 6 | 7 | 5.71 | 1.53 | 0 | 4Yr | University of South Alabama (Mobile, AL) |
| 2006 | 12 | | 349 | FrRnd | 3 | Devil Rays | Antwonie Hubbard (minors) | | | | | | | | | | | | | HS | Hooks HS (Hooks, TX) |
| 2006 | 12 | | 359 | FrRnd | 13 | Cubs | Kitt Kopach (minors) | | | | | | | | | | | | | 4Yr | Illinois State University (Normal, IL) |
| 2006 | 12 | | 361 | FrRnd | 15 | Nationals | Cole Kimball (minors) | 0.4 | 12 | 1 | 0 | .000 | .500 | 12 | 1 | 0 | 1.93 | 1.36 | 0 | 4Yr | Centenary College (Hackettstown, NJ) |
| 2006 | 12 | | 362 | FrRnd | 16 | Brewers | Chad Robinson (minors) | | | | | | | | | | | | | HS | Silverado HS (Las Vegas, NV) |
| 2006 | 12 | | 363 | FrRnd | 17 | Padres | Stephen Faris (minors) | | | | | | | | | | | | | 4Yr | Clemson University (Clemson, SC) |
| 2006 | 12 | | 365 | FrRnd | 19 | Marlins | Brad Stone (minors) | | | | | | | | | | | | | 4Yr | Quincy University (Quincy, IL) |
| 2006 | 12 | | 368 | FrRnd | 22 | Athletics | Shane Presutti (minors) | | | | | | | | | | | | | 4Yr | Franklin Pierce University (Rindge, NH) |
| 2006 | 12 | | 369 | FrRnd | 23 | Astros | Bryan Hallberg (minors) | | | | | | | | | | | | | 4Yr | Pace University (New York, NY) |
| 2006 | 12 | | 371 | FrRnd | 25 | Indians | Daniel Frega (minors) | | | | | | | | | | | | | 4Yr | Illinois State University (Normal, IL) |
| 2006 | 12 | | 372 | FrRnd | 26 | Angels | Jordan Walden (minors) | 2.0 | 145 | 0 | 0 | | | 145 | 10 | 9 | 3.07 | 1.26 | 34 | HS | Mansfield HS (Mansfield, TX) |
| 2006 | 12 | | 374 | FrRnd | 28 | Yankees | Nicholas Peterson (minors) | | | | | | | | | | | | | 4Yr | University of Tampa (Tampa, FL) |
| 2006 | 13 | | 380 | FrRnd | 4 | Pirates | Brandon Holden (minors) | | | | | | | | | | | | | HS | Stoneman-Douglas HS (Parkland, FL) |
| 2006 | 13 | | 381 | FrRnd | 5 | Mariners | Joseph Kantakevich (minors) | | | | | | | | | | | | | 4Yr | College of William and Mary (Williamsburg, VA) |
| 2006 | 13 | | 382 | FrRnd | 6 | Tigers | Angel Castro (minors) | | | | | | | | | | | | | JC | Western Oklahoma State JC (Altus, OK) |
| 2006 | 13 | | 384 | FrRnd | 8 | Reds | Kevin Gunter (minors) | | | | | | | | | | | | | 4Yr | Old Dominion University (Norfolk, VA) |
| 2006 | 13 | | 385 | FrRnd | 9 | Orioles | Ryan Ouellette (minors) | | | | | | | | | | | | | JC | Indian River Community College (Fort Pierce, FL) |
| 2006 | 13 | | 391 | FrRnd | 15 | Nationals | Hassan Pena (minors) | | | | | | | | | | | | | JC | Palm Beach Community College (Lake Worth, FL) |
| 2006 | 13 | | 392 | FrRnd | 16 | Brewers | Chris Toneguzzi (minors) | | | | | | | | | | | | | 4Yr | Purdue University (West Lafayette, IN) |
| 2006 | 13 | | 400 | FrRnd | 24 | Braves | Joseph Johnson (minors) | | | | | | | | | | | | | JC | Louisburg College (Louisburg, NC) |
| 2006 | 13 | | 401 | FrRnd | 25 | Indians | Brant Rustich (minors) | | | | | | | | | | | | | 4Yr | University of California, Los Angeles (Los Angeles, CA) |
| 2006 | 13 | | 403 | FrRnd | 27 | Red Sox | Jordan Craft (minors) | | | | | | | | | | | | | 4Yr | Dallas Baptist University (Dallas, TX) |
| 2006 | 13 | | 404 | FrRnd | 28 | Yankees | Daniel McCutchen (minors) | 0.3 | 108 | 30 | 0 | .067 | .192 | 108 | 8 | 11 | 4.77 | 1.49 | 0 | 4Yr | University of Oklahoma (Norman, OK) |
| 2006 | 13 | | 405 | FrRnd | 29 | White Sox | Tyson Corley (minors) | | | | | | | | | | | | | JC | South Mountain Community College (Phoenix, AZ) |
| 2006 | 14 | | 407 | FrRnd | 1 | Royals | Daniel Best (minors) | | | | | | | | | | | | | 4Yr | University of Southern Mississippi (Hattiesburg, MS) |
| 2006 | 14 | | 409 | FrRnd | 3 | Devil Rays | Travis Barnett (minors) | | | | | | | | | | | | | JC | Salt Lake Community College (Salt Lake City, UT) |
| 2006 | 14 | | 412 | FrRnd | 6 | Tigers | Brett Jensen (minors) | | | | | | | | | | | | | 4Yr | University of Nebraska at Lincoln (Lincoln, NE) |
| 2006 | 14 | | 413 | FrRnd | 7 | Dodgers | Alex White (minors) | -0.4 | 38 | 41 | 2 | .146 | .484 | 33 | 5 | 13 | 6.03 | 1.69 | 0 | HS | D H Conley HS (Greenville, NC) |
| 2006 | 14 | | 415 | FrRnd | 9 | Orioles | Brent Allar (minors) | | | | | | | | | | | | | 4Yr | Texas Christian University (Fort Worth, TX) |
| 2006 | 14 | | 416 | FrRnd | 10 | Giants | Eric Stolp (minors) | | | | | | | | | | | | | 4Yr | University of the Pacific (Stockton, CA) |
| 2006 | 14 | | 417 | FrRnd | 11 | Diamondbacks | Chad Beck (minors) | -0.2 | 17 | 0 | 0 | | | 17 | 0 | 0 | 5.50 | 1.50 | 0 | 4Yr | University of Louisiana at Lafayette (Lafayette, LA) |
| 2006 | 14 | | 425 | FrRnd | 19 | Marlins | Jay Buente (minors) | -0.3 | 10 | 1 | 0 | .000 | .000 | 10 | 0 | 1 | 7.31 | 2.44 | 0 | 4Yr | Purdue University (West Lafayette, IN) |
| 2006 | 14 | | 426 | FrRnd | 20 | Twins | Jeff Manship (minors) | -0.9 | 41 | 1 | 0 | .000 | .000 | 41 | 3 | 2 | 6.20 | 1.62 | 0 | 4Yr | University of Notre Dame (South Bend, IN) |
| 2006 | 14 | | 430 | FrRnd | 24 | Braves | Matthew Small (minors) | | | | | | | | | | | | | HS | Ipswich HS (Ipswich, MA) |
| 2006 | 15 | | 441 | FrRnd | 5 | Mariners | Andrew Fiorenza (minors) | | | | | | | | | | | | | 4Yr | Clemson University (Clemson, SC) |
| 2006 | 15 | | 450 | FrRnd | 14 | Blue Jays | Seth Overbey (minors) | | | | | | | | | | | | | 4Yr | University of Maryland (College Park, MD) |
| 2006 | 15 | | 453 | FrRnd | 17 | Padres | Matt Buschmann (minors) | | | | | | | | | | | | | 4Yr | Vanderbilt University (Nashville, TN) |
| 2006 | 15 | | 458 | FrRnd | 22 | Athletics | Kyle Christensen (minors) | | | | | | | | | | | | | HS | Millikan HS (Long Beach, CA) |
| 2006 | 15 | | 464 | FrRnd | 28 | Yankees | Gabe Medina (minors) | | | | | | | | | | | | | 4Yr | Emporia State University (Emporia, KS) |
| 2006 | 15 | | 465 | FrRnd | 29 | White Sox | Yasser Clor (minors) | | | | | | | | | | | | | HS | Wilcox HS (Santa Clara, CA) |
| 2006 | 16 | | 471 | FrRnd | 5 | Mariners | Austin Bibens-Dirkx (minors) | | | | | | | | | | | | | 4Yr | University of Portland (Portland, OR) |
| 2006 | 16 | | 472 | FrRnd | 6 | Tigers | Jeff Gerbe (minors) | | | | | | | | | | | | | 4Yr | Michigan State University (East Lansing, MI) |
| 2006 | 16 | | 480 | FrRnd | 14 | Blue Jays | Chase Lirette (minors) | | | | | | | | | | | | | 4Yr | University of South Florida (Tampa, FL) |
| 2006 | 16 | | 482 | FrRnd | 16 | Brewers | R.J. Seidel (minors) | | | | | | | | | | | | | HS | Central HS (LaCrosse, WI) |
| 2006 | 16 | | 484 | FrRnd | 18 | Mets | Tobi Stoner (minors) | 0.1 | 5 | 0 | 0 | | | 5 | 0 | 1 | 3.97 | 1.41 | 0 | 4Yr | Davis and Elkins College (Elkins, WV) |
| 2006 | 16 | | 490 | FrRnd | 24 | Braves | Jack Tilghman (minors) | | | | | | | | | | | | | JC | Walters State Community College (Morristown, TN) |
| 2006 | 16 | | 492 | FrRnd | 26 | Angels | Scott Carroll (minors) | | | | | | | | | | | | | 4Yr | Missouri State University (Springfield, MO) |
| 2006 | 16 | | 494 | FrRnd | 28 | Yankees | Paul Patterson (minors) | | | | | | | | | | | | | 4Yr | Northern Kentucky University (Highland Heights, KY) |
| 2006 | 17 | | 498 | FrRnd | 2 | Rockies | Michael Gibbs (minors) | | | | | | | | | | | | | 4Yr | Virginia Commonwealth University (Richmond, VA) |
| 2006 | 17 | | 500 | FrRnd | 4 | Pirates | Michael Crotta (minors) | -0.6 | 15 | 0 | 0 | | | 15 | 0 | 1 | 9.28 | 2.34 | 0 | 4Yr | Florida Atlantic University (Boca Raton, FL) |
| 2006 | 17 | | 506 | FrRnd | 10 | Giants | Kevin Pucetas (minors) | | | | | | | | | | | | | 4Yr | Limestone College (Gaffney, SC) |
| 2006 | 17 | | 507 | FrRnd | 11 | Diamondbacks | Brett Reynolds (minors) | | | | | | | | | | | | | 4Yr | University of Missouri Columbia (Columbia, MO) |
| 2006 | 17 | | 508 | FrRnd | 12 | Rangers | John Maschino (minors) | | | | | | | | | | | | | JC | Seminole State College (Seminole, OK) |
| 2006 | 17 | | 510 | FrRnd | 14 | Blue Jays | Kyle Ginley (minors) | | | | | | | | | | | | | JC | St. Petersburg College (St. Petersburg, FL) |
| 2006 | 17 | | 511 | FrRnd | 15 | Nationals | Erik Arnesen (minors) | | | | | | | | | | | | | 4Yr | Grove City College (Grove City, PA) |
| 2006 | 17 | | 512 | FrRnd | 16 | Brewers | Aaron Tullo (minors) | | | | | | | | | | | | | HS | St. Petersburg HS (St. Petersburg, FL) |
| 2006 | 17 | | 513 | FrRnd | 17 | Padres | Tyler Mead (minors) | | | | | | | | | | | | | HS | Skyview HS (Vancouver, WA) |
| 2006 | 17 | | 519 | FrRnd | 23 | Astros | Justin Stiver (minors) | | | | | | | | | | | | | JC | Gulf Coast Community College (Panama City, FL) |
| 2006 | 17 | | 521 | FrRnd | 25 | Indians | Kyle Harper (minors) | | | | | | | | | | | | | JC | Orange Coast College (Costa Mesa, CA) |
| 2006 | 17 | | 524 | FrRnd | 28 | Yankees | David Robertson (minors) | 7.9 | 299 | 0 | 0 | | | 299 | 20 | 14 | 2.94 | 1.27 | 5 | 4Yr | University of Alabama (Tuscaloosa, AL) |
| 2006 | 18 | | 528 | FrRnd | 2 | Rockies | Andrew Cashner (minors) | 1.5 | 111 | 30 | 0 | .200 | .426 | 109 | 10 | 13 | 3.99 | 1.31 | 0 | JC | Angelina College (Lufkin, TX) |
| 2006 | 18 | | 529 | FrRnd | 3 | Devil Rays | James Brown (minors) | | | | | | | | | | | | | JC | Young Harris College (Young Harris, GA) |
| 2006 | 18 | | 530 | FrRnd | 4 | Pirates | Francisco Ortiz (minors) | | | | | | | | | | | | | | |
| 2006 | 18 | | 531 | FrRnd | 5 | Mariners | Kameron Mickolio (minors) | 0.0 | 29 | 1 | 0 | .000 | .000 | 29 | 0 | 3 | 4.83 | 1.61 | 0 | JC | Utah Valley State University (Orem, UT) |
| 2006 | 18 | | 533 | FrRnd | 7 | Dodgers | Joseph Jones (minors) | | | | | | | | | | | | | 4Yr | University of Portland (Portland, OR) |
| 2006 | 18 | | 536 | FrRnd | 10 | Giants | Jeff Stallings (minors) | | | | | | | | | | | | | 4Yr | North Carolina State University (Raleigh, NC) |
| 2006 | 18 | | 538 | FrRnd | 12 | Rangers | Michael Wagner (minors) | | | | | | | | | | | | | 4Yr | Washington State University (Pullman, WA) |
| 2006 | 18 | | 539 | FrRnd | 13 | Cubs | Jose Hernandez (minors) | | | | | | | | | | | | | HS | Edgewater HS (Orlando, FL) |
| 2006 | 18 | | 541 | FrRnd | 15 | Nationals | Adam Carr (minors) | | | | | | | | | | | | | 4Yr | Oklahoma State University (Stillwater, OK) |
| 2006 | 18 | | 545 | FrRnd | 19 | Marlins | Ross Liersemann (minors) | | | | | | | | | | | | | 4Yr | University of Akron (Akron, OH) |
| 2006 | 18 | | 547 | FrRnd | 21 | Phillies | Michael Dubee (minors) | | | | | | | | | | | | | JC | Okaloosa-Walton College (Niceville, FL) |
| 2006 | 18 | | 549 | FrRnd | 23 | Astros | Colt Adams (minors) | | | | | | | | | | | | | 4Yr | Dixie State College of Utah (St. George, UT) |
| 2006 | 18 | | 552 | FrRnd | 26 | Angels | Charles Brewer (minors) | 0.1 | 2 | 0 | 0 | | | 2 | 0 | 0 | 0.00 | 1.36 | 0 | HS | Chaparral HS (Scottsdale, AZ) |
| 2006 | 19 | | 557 | FrRnd | 1 | Royals | Jeff Inman (minors) | | | | | | | | | | | | | HS | Garces Memorial HS (Bakersfield, CA) |
| 2006 | 19 | | 561 | FrRnd | 5 | Mariners | Cameron Nobles (minors) | | | | | | | | | | | | | HS | Jackson HS (Jackson, WA) |
| 2006 | 19 | | 563 | FrRnd | 7 | Dodgers | Martin Beno (minors) | | | | | | | | | | | | | JC | Mississippi Gulf Coast Community College (Perkinston, MS) |
| 2006 | 19 | | 564 | FrRnd | 8 | Reds | Derrik Lutz (minors) | | | | | | | | | | | | | 4Yr | George Washington University (Washington, DC) |
| 2006 | 19 | | 571 | FrRnd | 15 | Nationals | Sam Dyson (minors) | -0.2 | 2 | 0 | 0 | | | 2 | 0 | 0 | 40.50 | 9.00 | 0 | HS | Jesuit HS (Tampa, FL) |
| 2006 | 19 | | 575 | FrRnd | 19 | Marlins | Jordan Davis (minors) | | | | | | | | | | | | | 4Yr | University of Alabama (Tuscaloosa, AL) |
| 2006 | 19 | | 577 | FrRnd | 21 | Phillies | Robert Roth (minors) | | | | | | | | | | | | | HS | Lewiston HS (Lewiston, ID) |
| 2006 | 19 | | 580 | FrRnd | 24 | Braves | Deunte Heath (minors) | -0.2 | 7 | 0 | 0 | | | 7 | 0 | 0 | 9.39 | 2.09 | 0 | 4Yr | University of Tennessee (Knoxville, TN) |
| 2006 | 19 | | 581 | FrRnd | 25 | Indians | Josh Tomlin (minors) | 1.5 | 60 | 7 | 0 | .571 | 1.143 | 59 | 23 | 19 | 4.95 | 1.23 | 0 | 4Yr | Texas Tech University (Lubbock, TX) |
| 2006 | 19 | | 583 | FrRnd | 27 | Red Sox | Richard Lentz (minors) | | | | | | | | | | | | | 4Yr | University of Washington (Seattle, WA) |
| 2006 | 20 | | 587 | FrRnd | 1 | Royals | Brad Boxberger (minors) | 0.0 | 29 | 2 | 0 | .000 | .000 | 29 | 0 | 1 | 2.80 | 1.39 | 1 | HS | Foothill HS (Santa Ana, CA) |
| 2006 | 20 | | 588 | FrRnd | 2 | Rockies | Sean Jarrett (minors) | | | | | | | | | | | | | 4Yr | Oral Roberts University (Tulsa, OK) |
| 2006 | 20 | | 589 | FrRnd | 3 | Devil Rays | Erik Walker (minors) | | | | | | | | | | | | | 4Yr | University of North Carolina at Charlotte (Charlotte, NC) |
| 2006 | 20 | | 592 | FrRnd | 6 | Tigers | Casey Fien (minors) | 0.8 | 79 | 0 | 0 | | | 79 | 3 | 4 | 3.87 | 1.07 | 0 | 4Yr | California Polytechnic State University, San Luis Obispo (San Luis Obispo, CA) |
| 2006 | 20 | | 593 | FrRnd | 7 | Dodgers | Billy Bullock (minors) | | | | | | | | | | | | | HS | Riverview HS (Riverview, FL) |
| 2006 | 20 | | 596 | FrRnd | 10 | Giants | Adam Paul (minors) | | | | | | | | | | | | | 4Yr | University of North Carolina at Wilmington (Wilmington, NC) |
| 2006 | 20 | | 597 | FrRnd | 11 | Diamondbacks | Enrique Garcia (minors) | | | | | | | | | | | | | JC | Potomac State College (Keyser, WV) |
| 2006 | 20 | | 598 | FrRnd | 12 | Rangers | Tyler Fleming (minors) | | | | | | | | | | | | | JC | Cowley County Community College (Arkansas City, KS) |
| 2006 | 20 | | 599 | FrRnd | 13 | Cubs | Kevin Kreier (minors) | | | | | | | | | | | | | HS | Foothill HS (Henderson, NV) |
| 2006 | 20 | | 601 | FrRnd | 15 | Nationals | Alberto Tavarez (minors) | | | | | | | | | | | | | JC | Western Oklahoma State JC (Altus, OK) |
| 2006 | 20 | | 608 | FrRnd | 22 | Athletics | Joshua McLaughlin (minors) | | | | | | | | | | | | | 4Yr | College of Charleston (Charleston, SC) |
| 2006 | 20 | | 611 | FrRnd | 25 | Indians | Vinnie Pestano (minors) | 4.5 | 162 | 0 | 0 | | | 162 | 5 | 7 | 2.69 | 1.14 | 7 | 4Yr | California State University Fullerton (Fullerton, CA) |
| 2006 | 20 | | 615 | FrRnd | 29 | White Sox | Wade Kapteyn (minors) | | | | | | | | | | | | | HS | Illiana Christian HS (Lansing, IL) |
| 2006 | 20 | | 616 | FrRnd | 30 | Cardinals | Brandon Cooney (minors) | | | | | | | | | | | | | 4Yr | Florida Atlantic University (Boca Raton, FL) |
| 2006 | 21 | | 618 | FrRnd | 2 | Rockies | Andy Graham (minors) | | | | | | | | | | | | | 4Yr | University of California, Santa Barbara (Santa Barbara, CA) |
| 2006 | 21 | | 620 | FrRnd | 4 | Pirates | Kody Paul (minors) | | | | | | | | | | | | | HS | Glynn Academy HS (Brunswick, GA) |
| 2006 | 21 | | 624 | FrRnd | 8 | Reds | Christopher White (minors) | | | | | | | | | | | | | 4Yr | Texas A&M University-Kingsville (Kingsville, TX) |
| 2006 | 21 | | 628 | FrRnd | 12 | Rangers | Brandt Walker (minors) | | | | | | | | | | | | | HS | St. Stephens Episcopal School (Austin, TX) |
| 2006 | 21 | | 635 | FrRnd | 19 | Marlins | Corey Madden (minors) | | | | | | | | | | | | | 4Yr | St. Mary's College of California (Moraga, CA) |
| 2006 | 21 | | 640 | FrRnd | 24 | Braves | Jordan Brown (minors) | | | | | | | | | | | | | JC | Meridian Community College (Meridian, MS) |
| 2006 | 21 | | 643 | FrRnd | 27 | Red Sox | Brian Steinocher (minors) | | | | | | | | | | | | | 4Yr | Stephen F Austin State University (Nacogdoches, TX) |
| 2006 | 21 | | 646 | FrRnd | 30 | Cardinals | Mark Diapoules (minors) | | | | | | | | | | | | | HS | Martin County HS (Stuart, FL) |
| 2006 | 22 | | 647 | FrRnd | 1 | Royals | Romas Hicks (minors) | | | | | | | | | | | | | 4Yr | Georgia State University (Atlanta, GA) |
| 2006 | 22 | | 652 | FrRnd | 6 | Tigers | Christopher Krawczyk (minors) | | | | | | | | | | | | | 4Yr | Missouri State University (Springfield, MO) |
| 2006 | 22 | | 654 | FrRnd | 8 | Reds | Adam Pointer (minors) | | | | | | | | | | | | | JC | Alvin Community College (Alvin, TX) |
| 2006 | 22 | | 662 | FrRnd | 16 | Brewers | J.T. King (minors) | | | | | | | | | | | | | JC | Northeast Oklahoma A&M College (Miami, OK) |
| 2006 | 22 | | 664 | FrRnd | 18 | Mets | Tim Stronach (minors) | | | | | | | | | | | | | 4Yr | Worcester State College (Worcester, MA) |
| 2006 | 22 | | 667 | FrRnd | 21 | Phillies | Ben Pfinsgraff (minors) | | | | | | | | | | | | | 4Yr | University of Maryland (College Park, MD) |
| 2006 | 22 | | 668 | FrRnd | 22 | Athletics | Pat Currin (minors) | | | | | | | | | | | | | 4Yr | University of North Carolina at Greensboro (Greensboro, NC) |
| 2006 | 22 | | 669 | FrRnd | 23 | Astros | Chad Wagler (minors) | | | | | | | | | | | | | 4Yr | Kent State University (Kent, OH) |
| 2006 | 22 | | 673 | FrRnd | 27 | Red Sox | Michael Christl (minors) | | | | | | | | | | | | | 4Yr | Bradley University (Peoria, IL) |
| 2006 | 22 | | 675 | FrRnd | 29 | White Sox | Kanekoa Texeira (minors) | 0.3 | 49 | 1 | 0 | .000 | .000 | 49 | 1 | 1 | 4.66 | 1.68 | 0 | JC | Saddleback College (Mission Viejo, CA) |
| 2006 | 22 | | 676 | FrRnd | 30 | Cardinals | Casey Mulligan (minors) | | | | | | | | | | | | | HS | Valencia HS (Valencia, CA) |
| 2006 | 23 | | 677 | FrRnd | 1 | Royals | Aaron Hartsock (minors) | | | | | | | | | | | | | 4Yr | California Baptist University (Riverside, CA) |
| 2006 | 23 | | 680 | FrRnd | 4 | Pirates | Preston Claiborne (minors) | 0.9 | 16 | 0 | 0 | | | 16 | 0 | 1 | 0.86 | 0.76 | 0 | HS | Newman Smith HS (Carrollton, TX) |
| 2006 | 23 | | 683 | FrRnd | 7 | Dodgers | Eric Thompson (minors) | | | | | | | | | | | | | HS | Roseburg HS (Roseburg, OR) |
| 2006 | 23 | | 685 | FrRnd | 9 | Orioles | Aubrey Miller (minors) | | | | | | | | | | | | | 4Yr | Arkansas Tech University (Russellville, AR) |
| 2006 | 23 | | 686 | FrRnd | 10 | Giants | Eddie Crow (minors) | | | | | | | | | | | | | HS | Sitka HS (Sitka, AK) |
| 2006 | 23 | | 689 | FrRnd | 13 | Cubs | Charles Platt (minors) | | | | | | | | | | | | | 4Yr | Lamar University (Beaumont, TX) |
| 2006 | 23 | | 692 | FrRnd | 16 | Brewers | Scott Shuman (minors) | | | | | | | | | | | | | HS | Tift County HS (Tifton, GA) |
| 2006 | 23 | | 694 | FrRnd | 18 | Mets | Nicholas Waechter (minors) | | | | | | | | | | | | | 4Yr | Western Oregon University (Monmouth, OR) |
| 2006 | 23 | | 696 | FrRnd | 20 | Twins | Thomas Wright (minors) | | | | | | | | | | | | | HS | McGavock HS (Nashville, TN) |
| 2006 | 23 | | 698 | FrRnd | 22 | Athletics | Scott Moore (minors) | | | | | | | | | | | | | 4Yr | Texas State University (San Marcos, TX) |
| 2006 | 23 | | 702 | FrRnd | 26 | Angels | Tim Schoeninger (minors) | | | | | | | | | | | | | 4Yr | University of Nevada-Reno (Reno, NV) |
| 2006 | 23 | | 706 | FrRnd | 30 | Cardinals | LaCurtis Mayes (minors) | | | | | | | | | | | | | HS | Poly HS (Riverside, CA) |
| 2006 | 24 | | 708 | FrRnd | 2 | Rockies | Shane Dyer (minors) | | | | | | | | | | | | | HS | Eaton HS (Eaton, CO) |
| 2006 | 24 | | 709 | FrRnd | 3 | Devil Rays | Angel Chapa (minors) | | | | | | | | | | | | | JC | Treasure Valley Community College (Ontario, OR) |
| 2006 | 24 | | 710 | FrRnd | 4 | Pirates | Scott Massey (minors) | | | | | | | | | | | | | 4Yr | University of Southern Mississippi (Hattiesburg, MS) |
| 2006 | 24 | | 711 | FrRnd | 5 | Mariners | Kyle Parker (minors) | | | | | | | | | | | | | 4Yr | University of Washington (Seattle, WA) |
| 2006 | 24 | | 715 | FrRnd | 9 | Orioles | Josh Faiola (minors) | | | | | | | | | | | | | 4Yr | Dartmouth College (Hanover, NH) |
| 2006 | 24 | | 716 | FrRnd | 10 | Giants | Jeff Walters (minors) | | | | | | | | | | | | | HS | Olympia HS (Orlando, FL) |
| 2006 | 24 | | 720 | FrRnd | 14 | Blue Jays | Keith Demorgandie (minors) | | | | | | | | | | | | | JC | Orange Coast College (Costa Mesa, CA) |
| 2006 | 24 | | 722 | FrRnd | 16 | Brewers | Travis Wendte (minors) | | | | | | | | | | | | | 4Yr | University of Missouri Columbia (Columbia, MO) |
| 2006 | 24 | | 723 | FrRnd | 17 | Padres | Nicholas Tucci (minors) | | | | | | | | | | | | | 4Yr | University of Connecticut (Storrs, CT) |
| 2006 | 24 | | 727 | FrRnd | 21 | Phillies | Garet Hill (minors) | | | | | | | | | | | | | 4Yr | Biola University (La Mirada, CA) |
| 2006 | 24 | | 728 | FrRnd | 22 | Athletics | Earl Oakes (minors) | | | | | | | | | | | | | 4Yr | Pace University (New York, NY) |
| 2006 | 24 | | 733 | FrRnd | 27 | Red Sox | Robert Phares (minors) | | | | | | | | | | | | | JC | Shelton State Community College (Tuscaloosa, AL) |
| 2006 | 24 | | 735 | FrRnd | 29 | White Sox | Mike Rocco (minors) | | | | | | | | | | | | | 4Yr | California State University San Bernardino (San Bernardino, CA) |
| 2006 | 25 | | 739 | FrRnd | 3 | Devil Rays | Blaine Howell (minors) | | | | | | | | | | | | | HS | AC Reynolds HS (Asheville, NC) |
| 2006 | 25 | | 740 | FrRnd | 4 | Pirates | Adam Simon (minors) | | | | | | | | | | | | | 4Yr | San Diego State University (San Diego, CA) |
| 2006 | 25 | | 742 | FrRnd | 6 | Tigers | Casey Weathers (minors) | | | | | | | | | | | | | 4Yr | Vanderbilt University (Nashville, TN) |
| 2006 | 25 | | 745 | FrRnd | 9 | Orioles | Donald Anderson (minors) | | | | | | | | | | | | | JC | Southwestern College (Chula Vista, CA) |
| 2006 | 25 | | 749 | FrRnd | 13 | Cubs | Jamie Bagley (minors) | | | | | | | | | | | | | HS | Hargrave HS (Hargrave, TX) |
| 2006 | 25 | | 754 | FrRnd | 18 | Mets | Steven Cheney (minors) | | | | | | | | | | | | | JC | Gulf Coast Community College (Panama City, FL) |
| 2006 | 25 | | 755 | FrRnd | 19 | Marlins | Joel Fountain (minors) | | | | | | | | | | | | | 4Yr | St. Mary's College of California (Moraga, CA) |
| 2006 | 25 | | 757 | FrRnd | 21 | Phillies | William Mohl (minors) | | | | | | | | | | | | | 4Yr | Tulane University (New Orleans, LA) |
| 2006 | 25 | | 759 | FrRnd | 23 | Astros | Jamaal Hollis (minors) | | | | | | | | | | | | | HS | Whitney-Young HS (Chicago, IL) |
| 2006 | 25 | | 760 | FrRnd | 24 | Braves | Kyle Witten (minors) | | | | | | | | | | | | | HS | Liberty HS (Liberty, CA) |
| 2006 | 25 | | 761 | FrRnd | 25 | Indians | Alexander Jordan (minors) | | | | | | | | | | | | | JC | Cypress College (Cypress, CA) |
| 2006 | 25 | | 762 | FrRnd | 26 | Angels | Jason Jarvis (minors) | | | | | | | | | | | | | HS | Chaparral HS (Scottsdale, AZ) |
| 2006 | 25 | | 763 | FrRnd | 27 | Red Sox | Sean Gleason (minors) | | | | | | | | | | | | | JC | Lamar Community College (Lamar, CO) |
| 2006 | 26 | | 769 | FrRnd | 3 | Devil Rays | Johnathon Parker (minors) | | | | | | | | | | | | | HS | Lord Tweedsmuir HS (Surrey, BC) |
| 2006 | 26 | | 770 | FrRnd | 4 | Pirates | Ryan Kelly (minors) | | | | | | | | | | | | | HS | Hilton Head HS (Hilton Head, SC) |
| 2006 | 26 | | 774 | FrRnd | 8 | Reds | Anthony Gressick (minors) | | | | | | | | | | | | | 4Yr | Ohio University (Athens, OH) |
| 2006 | 26 | | 776 | FrRnd | 10 | Giants | Shane Mathews (minors) | | | | | | | | | | | | | 4Yr | East Carolina University (Greenville, NC) |
| 2006 | 26 | | 777 | FrRnd | 11 | Diamondbacks | Frank Corolla (minors) | | | | | | | | | | | | | HS | Magnolia HS (Magnolia, TX) |
| 2006 | 26 | | 779 | FrRnd | 13 | Cubs | Michael Cooper (minors) | | | | | | | | | | | | | 4Yr | University of California, Berkeley (Berkeley, CA) |
| 2006 | 26 | | 783 | FrRnd | 17 | Padres | Jeremy McBryde (minors) | | | | | | | | | | | | | JC | Rose State JC (Midwest City, OK) |
| 2006 | 26 | | 786 | FrRnd | 20 | Twins | Kyle Mitchell (minors) | | | | | | | | | | | | | HS | A. Crawford Mosley HS (Lynn Haven, FL) |
| 2006 | 26 | | 787 | FrRnd | 21 | Phillies | Will Savage (minors) | | | | | | | | | | | | | 4Yr | University of Oklahoma (Norman, OK) |
| 2006 | 26 | | 790 | FrRnd | 24 | Braves | Ryne Reynoso (minors) | | | | | | | | | | | | | 4Yr | Boston College (Chestnut Hill, MA) |
| 2006 | 26 | | 791 | FrRnd | 25 | Indians | Ty Pryor (minors) | | | | | | | | | | | | | 4Yr | University of Tennessee (Knoxville, TN) |
| 2006 | 26 | | 795 | FrRnd | 29 | White Sox | David Wasylak (minors) | | | | | | | | | | | | | 4Yr | Lubbock Christian University (Lubbock, TX) |
| 2006 | 27 | | 797 | FrRnd | 1 | Royals | Colby Killian (minors) | | | | | | | | | | | | | HS | Warren County HS (McMinnville, TN) |
| 2006 | 27 | | 801 | FrRnd | 5 | Mariners | Bryan Ball (minors) | | | | | | | | | | | | | 4Yr | University of Florida (Gainesville, FL) |
| 2006 | 27 | | 802 | FrRnd | 6 | Tigers | Ryan Lindgren (minors) | | | | | | | | | | | | | JC | Seminole Community College (Sanford, FL) |
| 2006 | 27 | | 805 | FrRnd | 9 | Orioles | Zachary Jevne (minors) | | | | | | | | | | | | | 4Yr | University of Northern Iowa (Cedar Falls, IA) |
| 2006 | 27 | | 809 | FrRnd | 13 | Cubs | Cedric Redmond (minors) | | | | | | | | | | | | | HS | Joliet Township HS (Joliet, IL) |
| 2006 | 27 | | 810 | FrRnd | 14 | Blue Jays | Patrick McGuigan (minors) | | | | | | | | | | | | | 4Yr | University of San Francisco (San Francisco, CA) |
| 2006 | 27 | | 812 | FrRnd | 16 | Brewers | T.J. Macy (minors) | | | | | | | | | | | | | JC | Scottsdale Community College (Scottsdale, AZ) |
| 2006 | 27 | | 813 | FrRnd | 17 | Padres | Matthew Huff (minors) | | | | | | | | | | | | | 4Yr | Regis University (Denver, CO) |
| 2006 | 27 | | 814 | FrRnd | 18 | Mets | Tim Haines (minors) | | | | | | | | | | | | | 4Yr | University of Texas Pan American (Edinburg, TX) |
| 2006 | 27 | | 815 | FrRnd | 19 | Marlins | Jeremy Hall (minors) | | | | | | | | | | | | | 4Yr | East Tennessee State University (Johnson City, TN) |
| 2006 | 27 | | 817 | FrRnd | 21 | Phillies | John Brownell (minors) | | | | | | | | | | | | | 4Yr | University of Oklahoma (Norman, OK) |
| 2006 | 27 | | 820 | FrRnd | 24 | Braves | Jake Rodriguez (minors) | | | | | | | | | | | | | HS | Whittier HS (Whittier, CA) |
| 2006 | 27 | | 822 | FrRnd | 26 | Angels | Matt Reilly (minors) | | | | | | | | | | | | | 4Yr | Pace University (New York, NY) |
| 2006 | 27 | | 823 | FrRnd | 27 | Red Sox | Brantley New (minors) | | | | | | | | | | | | | 4Yr | Mercer University (Macon, GA) |
| 2006 | 27 | | 824 | FrRnd | 28 | Yankees | Mike Lee (minors) | | | | | | | | | | | | | JC | Bellevue Community College (Bellevue, WA) |
| 2006 | 28 | | 831 | FrRnd | 5 | Mariners | Everett Collis (minors) | | | | | | | | | | | | | 4Yr | Cornell University (Ithaca, NY) |
| 2006 | 28 | | 832 | FrRnd | 6 | Tigers | Derek Witt (minors) | | | | | | | | | | | | | 4Yr | Ohio University (Athens, OH) |
| 2006 | 28 | | 833 | FrRnd | 7 | Dodgers | Taylor Lewis (minors) | | | | | | | | | | | | | HS | Canyon del Oro HS (Oro Valley, AZ) |
| 2006 | 28 | | 839 | FrRnd | 13 | Cubs | Brett Summers (minors) | | | | | | | | | | | | | JC | South Suburban College (South Holland, IL) |
| 2006 | 28 | | 840 | FrRnd | 14 | Blue Jays | Zach Dials (minors) | | | | | | | | | | | | | 4Yr | University of Kentucky (Lexington, KY) |
| 2006 | 28 | | 856 | FrRnd | 30 | Cardinals | Luke Gregerson (minors) | 4.1 | 323 | 2 | 0 | .000 | .000 | 323 | 15 | 16 | 2.82 | 1.09 | 15 | 4Yr | St. Xavier University (Orland Park, IL) |
| 2006 | 29 | | 860 | FrRnd | 4 | Pirates | Brandon Williams (minors) | | | | | | | | | | | | | 4Yr | University of South Carolina Upstate (Spartanburg, SC) |
| 2006 | 29 | | 865 | FrRnd | 9 | Orioles | Brandon Kimbrel (minors) | | | | | | | | | | | | | HS | Cameron Yoe HS (Cameron, TX) |
| 2006 | 29 | | 869 | FrRnd | 13 | Cubs | Jordan Latham (minors) | | | | | | | | | | | | | JC | College of Southern Idaho (Twin Falls, ID) |
| 2006 | 29 | | 878 | FrRnd | 22 | Athletics | Matthew Manship (minors) | | | | | | | | | | | | | 4Yr | Stanford University (Palo Alto, CA) |
| 2006 | 29 | | 880 | FrRnd | 24 | Braves | Andrew Dunn (minors) | | | | | | | | | | | | | JC | John A Logan College (Carterville, IL) |
| 2006 | 29 | | 881 | FrRnd | 25 | Indians | Thomas Benton (minors) | | | | | | | | | | | | | 4Yr | University of North Carolina at Wilmington (Wilmington, NC) |
| 2006 | 29 | | 882 | FrRnd | 26 | Angels | Michael Davitt (minors) | | | | | | | | | | | | | JC | Okaloosa-Walton College (Niceville, FL) |
| 2006 | 30 | | 887 | FrRnd | 1 | Royals | Tyler Pearson (minors) | | | | | | | | | | | | | 4Yr | University of Northern Colorado (Greeley, CO) |
| 2006 | 30 | | 896 | FrRnd | 10 | Giants | Daryl Maday (minors) | | | | | | | | | | | | | 4Yr | University of Arkansas (Fayetteville, AR) |
| 2006 | 30 | | 899 | FrRnd | 13 | Cubs | Donald Walters (minors) | | | | | | | | | | | | | | |
| 2006 | 30 | | 900 | FrRnd | 14 | Blue Jays | Raul Barron (minors) | | | | | | | | | | | | | JC | Pasadena City College (Pasadena, CA) |
| 2006 | 30 | | 903 | FrRnd | 17 | Padres | Joseph Cates (minors) | | | | | | | | | | | | | JC | Palomar College (San Marcos, CA) |
| 2006 | 30 | | 904 | FrRnd | 18 | Mets | Ricky Sparks (minors) | | | | | | | | | | | | | 4Yr | Dallas Baptist University (Dallas, TX) |
| 2006 | 30 | | 908 | FrRnd | 22 | Athletics | Joshua Morgan (minors) | | | | | | | | | | | | | 4Yr | University of Missouri St. Louis (St. Louis, MO) |
| 2006 | 30 | | 913 | FrRnd | 27 | Red Sox | Ryne Lawson (minors) | | | | | | | | | | | | | 4Yr | University of West Alabama (Livingston, AL) |
| 2006 | 31 | | 921 | FrRnd | 5 | Mariners | David McClain (minors) | | | | | | | | | | | | | JC | San Jacinto College (Pasadena, TX) |
| 2006 | 31 | | 924 | FrRnd | 8 | Reds | Eric Schaler (minors) | | | | | | | | | | | | | 4Yr | Dallas Baptist University (Dallas, TX) |
| 2006 | 31 | | 928 | FrRnd | 12 | Rangers | Adam Schaecher (minors) | | | | | | | | | | | | | 4Yr | Creighton University (Omaha, NE) |
| 2006 | 31 | | 929 | FrRnd | 13 | Cubs | Bryan Collins (minors) | | | | | | | | | | | | | JC | Alvin Community College (Alvin, TX) |
| 2006 | 31 | | 930 | FrRnd | 14 | Blue Jays | Adam Rogers (minors) | | | | | | | | | | | | | 4Yr | University of Evansville (Evansville, IN) |
| 2006 | 31 | | 932 | FrRnd | 16 | Brewers | Rob Bryson (minors) | | | | | | | | | | | | | HS | William Penn HS (New Castle, DE) |
| 2006 | 31 | | 933 | FrRnd | 17 | Padres | Jonathan Kirby (minors) | | | | | | | | | | | | | 4Yr | Lee University (Cleveland, TN) |
| 2006 | 31 | | 936 | FrRnd | 20 | Twins | Kyle Thornton (minors) | | | | | | | | | | | | | JC | Cowley County Community College (Arkansas City, KS) |
| 2006 | 31 | | 937 | FrRnd | 21 | Phillies | Bruce Billings (minors) | -0.3 | 4 | 0 | 0 | | | 4 | 0 | 0 | 10.29 | 2.71 | 0 | 4Yr | San Diego State University (San Diego, CA) |
| 2006 | 31 | | 939 | FrRnd | 23 | Astros | Kyle DeYoung (minors) | | | | | | | | | | | | | 4Yr | Florida Southern College (Lakeland, FL) |
| 2006 | 31 | | 942 | FrRnd | 26 | Angels | Dylan Lindsey (minors) | | | | | | | | | | | | | JC | Broward Community College (Fort Lauderdale, FL) |
| 2006 | 32 | | 948 | FrRnd | 2 | Rockies | Miguel Valcarcel (minors) | | | | | | | | | | | | | HS | Perkiomen School (Pennsburg, PA) |
| 2006 | 32 | | 950 | FrRnd | 4 | Pirates | Jorge Charry (minors) | | | | | | | | | | | | | JC | Florida Gateway College (Lake City, FL) |
| 2006 | 32 | | 952 | FrRnd | 6 | Tigers | Rudy Darrow (minors) | | | | | | | | | | | | | 4Yr | Nicholls State University (Thibodaux, LA) |
| 2006 | 32 | | 955 | FrRnd | 9 | Orioles | B.J. Dail (minors) | | | | | | | | | | | | | HS | Millbrook HS (Millbrook, NC) |
| 2006 | 32 | | 958 | FrRnd | 12 | Rangers | Shannon Wirth (minors) | | | | | | | | | | | | | 4Yr | Lewis-Clark State College (Lewiston, ID) |
| 2006 | 32 | | 960 | FrRnd | 14 | Blue Jays | Noah Tritz (minors) | | | | | | | | | | | | | 4Yr | University of Texas at San Antonio (San Antonio, TX) |
| 2006 | 32 | | 962 | FrRnd | 16 | Brewers | Nick Tyson (minors) | | | | | | | | | | | | | HS | Timber Creek Regional HS (Erial, NJ) |
| 2006 | 32 | | 963 | FrRnd | 17 | Padres | Jordan Rogers (minors) | | | | | | | | | | | | | JC | San Jacinto College (Pasadena, TX) |
| 2006 | 32 | | 965 | FrRnd | 19 | Marlins | Alex Sanabia (minors) | 0.6 | 28 | 41 | 0 | .049 | .142 | 28 | 8 | 10 | 4.15 | 1.44 | 0 | HS | Castle Park HS (Chula Vista, CA) |
| 2006 | 32 | | 969 | FrRnd | 23 | Astros | Adam Hale (minors) | | | | | | | | | | | | | 4Yr | Texas A&M University (College Station, TX) |
| 2006 | 32 | | 970 | FrRnd | 24 | Braves | Brendon Porch (minors) | | | | | | | | | | | | | HS | East Union HS (Blue Springs, MS) |
| 2006 | 32 | | 975 | FrRnd | 29 | White Sox | Alex Curry (minors) | | | | | | | | | | | | | HS | Canyon HS (Anaheim, CA) |
| 2006 | 33 | | 978 | FrRnd | 2 | Rockies | Drew Shetrone (minors) | | | | | | | | | | | | | 4Yr | Cumberland University (Lebanon, TN) |
| 2006 | 33 | | 981 | FrRnd | 5 | Mariners | Rob Harmon (minors) | | | | | | | | | | | | | 4Yr | University of Arkansas at Little Rock (Little Rock, AR) |
| 2006 | 33 | | 982 | FrRnd | 6 | Tigers | Kodiak Quick (minors) | | | | | | | | | | | | | 4Yr | University of Kansas (Lawrence, KS) |
| 2006 | 33 | | 984 | FrRnd | 8 | Reds | Justin Curry (minors) | | | | | | | | | | | | | HS | Buford HS (Buford, GA) |
| 2006 | 33 | | 985 | FrRnd | 9 | Orioles | Andrew Conklin (minors) | | | | | | | | | | | | | JC | South Mountain Community College (Phoenix, AZ) |
| 2006 | 33 | | 987 | FrRnd | 11 | Diamondbacks | Osbek Castillo (minors) | | | | | | | | | | | | | | |
| 2006 | 33 | | 989 | FrRnd | 13 | Cubs | Brad Clipp (minors) | | | | | | | | | | | | | 4Yr | Point Loma Nazarene University (San Diego, CA) |
| 2006 | 33 | | 993 | FrRnd | 17 | Padres | Sean Finefrock (minors) | | | | | | | | | | | | | HS | Blanchard HS (Blanchard, OK) |
| 2006 | 33 | | 995 | FrRnd | 19 | Marlins | Eric Basurto (minors) | | | | | | | | | | | | | JC | Chabot College (Hayward, CA) |
| 2006 | 33 | | 1004 | FrRnd | 28 | Yankees | Luke Trubee (minors) | | | | | | | | | | | | | 4Yr | University of Dayton (Dayton, OH) |
| 2006 | 34 | | 1009 | FrRnd | 3 | Devil Rays | Stephen McCray (minors) | | | | | | | | | | | | | HS | Parkview HS (Lilburn, GA) |
| 2006 | 34 | | 1010 | FrRnd | 4 | Pirates | Pernell Halliman (minors) | | | | | | | | | | | | | JC | West Hills College (Coalinga, CA) |
| 2006 | 34 | | 1012 | FrRnd | 6 | Tigers | Brandon Johnson (minors) | | | | | | | | | | | | | JC | Butler County Community College (El Dorado, KS) |
| 2006 | 34 | | 1015 | FrRnd | 9 | Orioles | Tyler Blandford (minors) | | | | | | | | | | | | | HS | Daviess County HS (Owensboro, KY) |
| 2006 | 34 | | 1018 | FrRnd | 12 | Rangers | Austin Weilep (minors) | | | | | | | | | | | | | 4Yr | Lewis-Clark State College (Lewiston, ID) |
| 2006 | 34 | | 1020 | FrRnd | 14 | Blue Jays | Graham Godfrey (minors) | -0.5 | 10 | 2 | 0 | .000 | .000 | 10 | 1 | 6 | 5.09 | 1.59 | 0 | 4Yr | College of Charleston (Charleston, SC) |
| 2006 | 34 | | 1022 | FrRnd | 16 | Brewers | Stuart Sutherland (minors) | | | | | | | | | | | | | 4Yr | Dallas Baptist University (Dallas, TX) |
| 2006 | 34 | | 1025 | FrRnd | 19 | Marlins | T.J. Kelly (minors) | | | | | | | | | | | | | JC | Bakersfield College (Bakersfield, CA) |
| 2006 | 34 | | 1027 | FrRnd | 21 | Phillies | Joshua Thrailkill (minors) | | | | | | | | | | | | | HS | T. C. Roberson HS (Arden, NC) |
| 2006 | 34 | | 1029 | FrRnd | 23 | Astros | John Anderson (minors) | | | | | | | | | | | | | HS | Captain Shreve HS (Shreveport, LA) |
| 2006 | 34 | | 1030 | FrRnd | 24 | Braves | Matthew Morgal (minors) | | | | | | | | | | | | | JC | Seminole State College (Seminole, OK) |
| 2006 | 34 | | 1031 | FrRnd | 25 | Indians | Michael Bolsinger (minors) | | | | | | | | | | | | | HS | McKinney North HS (McKinney, TX) |
| 2006 | 35 | | 1037 | FrRnd | 1 | Royals | Anthony Stovall (minors) | | | | | | | | | | | | | HS | Kailua HS (Kailua, HI) |
| 2006 | 35 | | 1044 | FrRnd | 8 | Reds | John Touchton (minors) | | | | | | | | | | | | | HS | Kingwood HS (Kingwood, TX) |
| 2006 | 35 | | 1046 | FrRnd | 10 | Giants | Adam Cowart (minors) | | | | | | | | | | | | | 4Yr | Kansas State University (Manhattan, KS) |
| 2006 | 35 | | 1047 | FrRnd | 11 | Diamondbacks | Casey Whitmer (minors) | | | | | | | | | | | | | HS | Kilgore HS (Kilgore, TX) |
| 2006 | 35 | | 1053 | FrRnd | 17 | Padres | Joe Cruz (minors) | | | | | | | | | | | | | HS | South Hills HS (West Covina, CA) |
| 2006 | 35 | | 1056 | FrRnd | 20 | Twins | Robby Donovan (minors) | | | | | | | | | | | | | HS | Royal Palm Beach HS (Royal Palm Beach, FL) |
| 2006 | 35 | | 1060 | FrRnd | 24 | Braves | Aryo Fleming (minors) | | | | | | | | | | | | | HS | Central HS (Central, LA) |
| 2006 | 35 | | 1062 | FrRnd | 26 | Angels | Aaron Cook (minors) | | | | | | | | | | | | | 4Yr | University of Tampa (Tampa, FL) |
| 2006 | 36 | | 1067 | FrRnd | 1 | Royals | Manuel Garcia (minors) | | | | | | | | | | | | | JC | Cochise Community College (Douglas, AZ) |
| 2006 | 36 | | 1070 | FrRnd | 4 | Pirates | Chad Arnold (minors) | | | | | | | | | | | | | HS | Southridge HS (Southridge, WA) |
| 2006 | 36 | | 1071 | FrRnd | 5 | Mariners | Kyle Haas (minors) | | | | | | | | | | | | | JC | Douglas College (New Westminster, BC) |
| 2006 | 36 | | 1072 | FrRnd | 6 | Tigers | Chad Nading (minors) | | | | | | | | | | | | | HS | East HS (Anchorage, AK) |
| 2006 | 36 | | 1074 | FrRnd | 8 | Reds | Nicholas Wandless (minors) | | | | | | | | | | | | | 4Yr | University of South Carolina Aiken (Aiken, SC) |
| 2006 | 36 | | 1075 | FrRnd | 9 | Orioles | Pat Egan (minors) | | | | | | | | | | | | | 4Yr | Quinnipiac College (Hamden, CT) |
| 2006 | 36 | | 1077 | FrRnd | 11 | Diamondbacks | Jason Durst (minors) | | | | | | | | | | | | | JC | Lake Sumter CC (Leesburg, FL) |
| 2006 | 36 | | 1078 | FrRnd | 12 | Rangers | John Slusarz (minors) | | | | | | | | | | | | | 4Yr | University of Connecticut (Storrs, CT) |
| 2006 | 36 | | 1079 | FrRnd | 13 | Cubs | Miguel Cuevas-Novas (minors) | | | | | | | | | | | | | JC | Los Angeles Pierce College (Woodland Hills, CA) |
| 2006 | 36 | | 1083 | FrRnd | 17 | Padres | Daniel Johansen (minors) | | | | | | | | | | | | | HS | Woodinville HS (Woodinville, WA) |
| 2006 | 36 | | 1084 | FrRnd | 18 | Mets | Edgar Ramirez (minors) | | | | | | | | | | | | | 4Yr | Louisiana State University (Baton Rouge, LA) |
| 2006 | 36 | | 1087 | FrRnd | 21 | Phillies | Kyle Gibson (minors) | | | | | | | | | | | | | HS | Greenfield Central HS (Greenfield, IN) |
| 2006 | 36 | | 1094 | FrRnd | 28 | Yankees | Jared Rogers (minors) | | | | | | | | | | | | | HS | Duncanville HS (Duncanville, TX) |
| 2006 | 36 | | 1096 | FrRnd | 30 | Cardinals | Adrian Alaniz (minors) | | | | | | | | | | | | | 4Yr | University of Texas at Austin (Austin, TX) |
| 2006 | 37 | | 1101 | FrRnd | 5 | Mariners | Chris Walden (minors) | | | | | | | | | | | | | HS | Bellefontaine HS (Bellefontaine, OH) |
| 2006 | 37 | | 1102 | FrRnd | 6 | Tigers | Ryan LaMotta (minors) | | | | | | | | | | | | | 4Yr | Baylor University (Waco, TX) |
| 2006 | 37 | | 1109 | FrRnd | 13 | Cubs | David Francis (minors) | | | | | | | | | | | | | HS | St. Joseph SS (Mississauga, ON) |
| 2006 | 37 | | 1111 | FrRnd | 15 | Nationals | Austin Hudson (minors) | | | | | | | | | | | | | HS | Boone HS (Orlando, FL) |
| 2006 | 37 | | 1113 | FrRnd | 17 | Padres | Miguel Flores (minors) | | | | | | | | | | | | | HS | St. John Bosco HS (Bellflower, CA) |
| 2006 | 37 | | 1114 | FrRnd | 18 | Mets | Josh Stinson (minors) | -0.2 | 21 | 1 | 0 | .000 | .500 | 21 | 0 | 2 | 5.14 | 1.39 | 1 | HS | Northwood HS (Shreveport, LA) |
| 2006 | 37 | | 1115 | FrRnd | 19 | Marlins | James Wallace (minors) | | | | | | | | | | | | | JC | College of Southern Idaho (Twin Falls, ID) |
| 2006 | 37 | | 1117 | FrRnd | 21 | Phillies | Shawn Epps (minors) | | | | | | | | | | | | | JC | Northern Oklahoma College (Enid, OK) |
| 2006 | 37 | | 1126 | FrRnd | 30 | Cardinals | Logan Collier (minors) | | | | | | | | | | | | | 4Yr | Guilford College (Greensboro, NC) |
| 2006 | 38 | | 1130 | FrRnd | 4 | Pirates | Matthew McCullen (minors) | | | | | | | | | | | | | 4Yr | Western Carolina University (Cullowhee, NC) |
| 2006 | 38 | | 1132 | FrRnd | 6 | Tigers | Dana Arrowood (minors) | | | | | | | | | | | | | 4Yr | Old Dominion University (Norfolk, VA) |
| 2006 | 38 | | 1135 | FrRnd | 9 | Orioles | Adam Urnberg (minors) | | | | | | | | | | | | | JC | College of Southern Idaho (Twin Falls, ID) |
| 2006 | 38 | | 1136 | FrRnd | 10 | Giants | Ryan Butner (minors) | | | | | | | | | | | | | HS | Hialeah HS (Hialeah, FL) |
| 2006 | 38 | | 1138 | FrRnd | 12 | Rangers | Jon Hollis (minors) | | | | | | | | | | | | | 4Yr | Yale University (New Haven, CT) |
| 2006 | 38 | | 1141 | FrRnd | 15 | Nationals | Zachary Von Tersch (minors) | | | | | | | | | | | | | HS | Cedar Falls HS (Cedar Falls, IA) |
| 2006 | 38 | | 1143 | FrRnd | 17 | Padres | Ben Francis (minors) | | | | | | | | | | | | | HS | A. Crawford Mosley HS (Lynn Haven, FL) |
| 2006 | 38 | | 1144 | FrRnd | 18 | Mets | J.J. Leaper (minors) | | | | | | | | | | | | | HS | Sentinel HS (Sentinel, OK) |
| 2006 | 38 | | 1146 | FrRnd | 20 | Twins | Randy Boone (minors) | | | | | | | | | | | | | 4Yr | University of Texas at Austin (Austin, TX) |
| 2006 | 38 | | 1151 | FrRnd | 25 | Indians | Nathan Bunton (minors) | | | | | | | | | | | | | 4Yr | Midland Lutheran College (Fremont, NE) |
| 2006 | 38 | | 1152 | FrRnd | 26 | Angels | Eduardo Chile (minors) | | | | | | | | | | | | | 4Yr | Rollins College (Winter Park, FL) |
| 2006 | 38 | | 1153 | FrRnd | 27 | Red Sox | Travis Beazley (minors) | | | | | | | | | | | | | 4Yr | Randolph-Macon College (Ashland, VA) |
| 2006 | 38 | | 1155 | FrRnd | 29 | White Sox | Jake Petricka (minors) | | | | | | | | | | | | | HS | Faribault HS (Faribault, MN) |
| 2006 | 39 | | 1157 | FrRnd | 1 | Royals | Steven Moore (minors) | | | | | | | | | | | | | HS | Thomasville HS (Thomasville, GA) |
| 2006 | 39 | | 1161 | FrRnd | 5 | Mariners | Philip Roy (minors) | | | | | | | | | | | | | JC | Miami-Dade College (Miami, FL) |
| 2006 | 39 | | 1168 | FrRnd | 12 | Rangers | Gary Poynter (minors) | | | | | | | | | | | | | JC | Weatherford College (Weatherford, TX) |
| 2006 | 39 | | 1170 | FrRnd | 14 | Blue Jays | Luke Tucker (minors) | | | | | | | | | | | | | 4Yr | Florida State University (Tallahassee, FL) |
| 2006 | 39 | | 1171 | FrRnd | 15 | Nationals | Andrew Doyle (minors) | | | | | | | | | | | | | HS | Alleman Catholic HS (Rock Island, IL) |
| 2006 | 39 | | 1176 | FrRnd | 20 | Twins | Anthony Slama (minors) | 0.0 | 7 | 0 | 0 | | | 7 | 0 | 1 | 5.14 | 1.86 | 0 | 4Yr | University of San Diego (San Diego, CA) |
| 2006 | 39 | | 1177 | FrRnd | 21 | Phillies | Gerard Mohrmann (minors) | | | | | | | | | | | | | HS | Manitou Springs HS (Manitou Springs, CO) |
| 2006 | 39 | | 1179 | FrRnd | 23 | Astros | Will Kline (minors) | | | | | | | | | | | | | 4Yr | University of Mississippi (Oxford, MS) |
| 2006 | 39 | | 1180 | FrRnd | 24 | Braves | Daniel Davidson (minors) | | | | | | | | | | | | | JC | Southern Union State Community College (Wadley, AL) |
| 2006 | 39 | | 1185 | FrRnd | 29 | White Sox | Clint Cisper (minors) | | | | | | | | | | | | | 4Yr | Northeastern State University (Tahlequah, OK) |
| 2006 | 40 | | 1189 | FrRnd | 3 | Devil Rays | Brando Casalicchio (minors) | | | | | | | | | | | | | HS | Cold Spring Harbor HS (Cold Spring Harbor, NY) |
| 2006 | 40 | | 1190 | FrRnd | 4 | Pirates | Philip Brannon (minors) | | | | | | | | | | | | | HS | Broome HS (Spartanburg, SC) |
| 2006 | 40 | | 1191 | FrRnd | 5 | Mariners | Haley Winter (minors) | | | | | | | | | | | | | 4Yr | University of California, Riverside (Riverside, CA) |
| 2006 | 40 | | 1198 | FrRnd | 12 | Rangers | Chris Dennis (minors) | | | | | | | | | | | | | 4Yr | Auburn University (Auburn, AL) |
| 2006 | 40 | | 1199 | FrRnd | 13 | Cubs | Eli Diaz (minors) | | | | | | | | | | | | | JC | Texarkana College (Texarkana, TX) |
| 2006 | 40 | | 1200 | FrRnd | 14 | Blue Jays | Ted Serro (minors) | | | | | | | | | | | | | 4Yr | Franklin and Marshall College (Lancaster, PA) |
| 2006 | 40 | | 1201 | FrRnd | 15 | Nationals | Nicholas Pearce (minors) | | | | | | | | | | | | | HS | DeMatha HS (Hyattsville, MD) |
| 2006 | 40 | | 1202 | FrRnd | 16 | Brewers | Alex Koronis (minors) | | | | | | | | | | | | | HS | Monsignor Edward Pace HS (Opa Locka, FL) |
| 2006 | 40 | | 1204 | FrRnd | 18 | Mets | Tyler Binkley (minors) | | | | | | | | | | | | | HS | St. Mary's College HS (Sault Ste. Marie, ON) |
| 2006 | 40 | | 1205 | FrRnd | 19 | Marlins | Luis Suarez (minors) | | | | | | | | | | | | | 4Yr | Southeastern Louisiana University (Hammond, LA) |
| 2006 | 40 | | 1208 | FrRnd | 22 | Athletics | Goldy Simmons (minors) | | | | | | | | | | | | | HS | Monta Vista HS (Cupertino, CA) |
| 2006 | 40 | | 1212 | FrRnd | 26 | Angels | Jacob Locker (minors) | | | | | | | | | | | | | HS | Ferndale HS (Ferndale, WA) |
| 2006 | 41 | | 1217 | FrRnd | 1 | Royals | Jeremy Toole (minors) | | | | | | | | | | | | | HS | Huntsville HS (Huntsville, TX) |
| 2006 | 41 | | 1218 | FrRnd | 2 | Rockies | Jay Taylor (minors) | | | | | | | | | | | | | HS | West Seattle HS (Seattle, WA) |
| 2006 | 41 | | 1220 | FrRnd | 4 | Pirates | Scott Kuhns (minors) | | | | | | | | | | | | | JC | Parkland College (Champaign, IL) |
| 2006 | 41 | | 1224 | FrRnd | 8 | Reds | Jeremy Erben (minors) | | | | | | | | | | | | | HS | New Braunfels HS (New Braunfels, TX) |
| 2006 | 41 | | 1225 | FrRnd | 9 | Orioles | Scott Migl (minors) | | | | | | | | | | | | | HS | St. Pius X HS (Houston, TX) |
| 2006 | 41 | | 1228 | FrRnd | 12 | Rangers | Brandon Gribbin (minors) | | | | | | | | | | | | | JC | Golden West College (Huntington Beach, CA) |
| 2006 | 41 | | 1229 | FrRnd | 13 | Cubs | Jonathan Negron (minors) | | | | | | | | | | | | | HS | Puerto Rico Baseball Academy (Gurabo, PR) |
| 2006 | 41 | | 1231 | FrRnd | 15 | Nationals | Brad Peacock (minors) | -0.1 | 12 | 4 | 0 | .000 | .000 | 12 | 3 | 3 | 5.93 | 1.56 | 0 | HS | Palm Beach Central HS (Wellington, FL) |
| 2006 | 41 | | 1234 | FrRnd | 18 | Mets | Vic Black (minors) | | | | | | | | | | | | | HS | Amarillo HS (Amarillo, TX) |
| 2006 | 41 | | 1235 | FrRnd | 19 | Marlins | Kyle Barry (minors) | | | | | | | | | | | | | | |
| 2006 | 41 | | 1236 | FrRnd | 20 | Twins | Joan Ortiz (minors) | | | | | | | | | | | | | HS | Juan Ponce De Leon HS (San Juan, PR) |
| 2006 | 41 | | 1240 | FrRnd | 24 | Braves | Keegan Dennis (minors) | | | | | | | | | | | | | HS | Carmi White Co HS (Carmi, IL) |
| 2006 | 41 | | 1245 | FrRnd | 29 | White Sox | Mike Bolsenbroek (minors) | | | | | | | | | | | | | JC | Santa Ana College (Santa Ana, CA) |
| 2006 | 42 | | 1251 | FrRnd | 5 | Mariners | Shane Cox (minors) | | | | | | | | | | | | | JC | Alvin Community College (Alvin, TX) |
| 2006 | 42 | | 1254 | FrRnd | 8 | Reds | John Housey (minors) | | | | | | | | | | | | | HS | Nova HS (Davie, FL) |
| 2006 | 42 | | 1256 | FrRnd | 10 | Giants | Brandon Grabham (minors) | | | | | | | | | | | | | JC | Grayson County College (Denison, TX) |
| 2006 | 42 | | 1261 | FrRnd | 15 | Nationals | Javier Martinez (minors) | | | | | | | | | | | | | 4Yr | Fordham University (New York, NY) |
| 2006 | 42 | | 1262 | FrRnd | 16 | Brewers | Matthew Peck (minors) | | | | | | | | | | | | | JC | Cowley County Community College (Arkansas City, KS) |
| 2006 | 42 | | 1264 | FrRnd | 18 | Mets | Terrell Stringer (minors) | | | | | | | | | | | | | HS | Smiths Station HS (Smiths Station, AL) |
| 2006 | 42 | | 1265 | FrRnd | 19 | Marlins | Ryan Kussmaul (minors) | | | | | | | | | | | | | | |
| 2006 | 42 | | 1266 | FrRnd | 20 | Twins | Chase Anderson (minors) | | | | | | | | | | | | | HS | Rider HS (Wichita Falls, TX) |
| 2006 | 42 | | 1267 | FrRnd | 21 | Phillies | Daniel Faulkner (minors) | | | | | | | | | | | | | HS | Bishop Noll Institute (Hammond, IN) |
| 2006 | 42 | | 1271 | FrRnd | 25 | Angels | Derrick Conatser (minors) | | | | | | | | | | | | | JC | Tallahassee Community College (Tallahassee, FL) |
| 2006 | 42 | | 1275 | FrRnd | 29 | Cardinals | Kyle Mura (minors) | | | | | | | | | | | | | 4Yr | Loyola Marymount University (Los Angeles, CA) |
| 2006 | 43 | | 1276 | FrRnd | 1 | Royals | Brennan Thorpe (minors) | | | | | | | | | | | | | JC | Saddleback College (Mission Viejo, CA) |
| 2006 | 43 | | 1279 | FrRnd | 4 | Pirates | Devin Copley (minors) | | | | | | | | | | | | | JC | Gulf Coast Community College (Panama City, FL) |
| 2006 | 43 | | 1280 | FrRnd | 5 | Mariners | Clint Straka (minors) | | | | | | | | | | | | | JC | Northern Oklahoma College (Enid, OK) |
| 2006 | 43 | | 1281 | FrRnd | 6 | Tigers | David Mattox (minors) | | | | | | | | | | | | | JC | Connors State College (Warner, OK) |
| 2006 | 43 | | 1282 | FrRnd | 7 | Dodgers | Jordan Chambless (minors) | | | | | | | | | | | | | 4Yr | Texas A&M University (College Station, TX) |
| 2006 | 43 | | 1283 | FrRnd | 8 | Reds | Geraldo Leal (minors) | | | | | | | | | | | | | HS | Mission HS (Mission, TX) |
| 2006 | 43 | | 1285 | FrRnd | 10 | Giants | Kevin Boggan (minors) | | | | | | | | | | | | | 4Yr | Boston College (Chestnut Hill, MA) |
| 2006 | 43 | | 1287 | FrRnd | 12 | Rangers | Shawn Sanford (minors) | | | | | | | | | | | | | HS | Cinnaminson HS (Cinnaminson, NJ) |
| 2006 | 43 | | 1289 | FrRnd | 14 | Blue Jays | Nathan Melek (minors) | | | | | | | | | | | | | 4Yr | University of New Mexico (Albuquerque, NM) |
| 2006 | 43 | | 1290 | FrRnd | 15 | Nationals | Cory Anderson (minors) | | | | | | | | | | | | | 4Yr | United States Coast Guard Academy (New London, CT) |
| 2006 | 43 | | 1291 | FrRnd | 16 | Brewers | Dustin Lidyard (minors) | | | | | | | | | | | | | JC | Lower Columbia College (Longview, WA) |
| 2006 | 43 | | 1294 | FrRnd | 19 | Marlins | William Jackel (minors) | | | | | | | | | | | | | JC | Tallahassee Community College (Tallahassee, FL) |
| 2006 | 43 | | 1295 | FrRnd | 20 | Twins | Francis Berry (minors) | | | | | | | | | | | | | HS | First Colonial HS (Virginia Beach, VA) |
| 2006 | 43 | | 1299 | FrRnd | 24 | Indians | Mike Pontius (minors) | | | | | | | | | | | | | HS | Wentzville Holt HS (Wentzville, MO) |
| 2006 | 44 | | 1305 | FrRnd | 1 | Royals | Bryan Paukovits (minors) | | | | | | | | | | | | | JC | Southwestern College (Chula Vista, CA) |
| 2006 | 44 | | 1309 | FrRnd | 5 | Mariners | Bryan Earley (minors) | | | | | | | | | | | | | HS | Elder HS (Cincinnati, OH) |
| 2006 | 44 | | 1311 | FrRnd | 7 | Dodgers | Aaron Barrett (minors) | | | | | | | | | | | | | HS | Central HS (Evansville, IN) |
| 2006 | 44 | | 1313 | FrRnd | 9 | Orioles | Travis Lamar (minors) | | | | | | | | | | | | | HS | Harrison HS (Evansville, IN) |
| 2006 | 44 | | 1316 | FrRnd | 12 | Rangers | Daniel Sattler (minors) | | | | | | | | | | | | | 4Yr | Purdue University (West Lafayette, IN) |
| 2006 | 44 | | 1317 | FrRnd | 13 | Cubs | Dan Berlind (minors) | | | | | | | | | | | | | HS | Calabasas HS (Calabasas, CA) |
| 2006 | 44 | | 1322 | FrRnd | 18 | Mets | Brad Schwarzenbach (minors) | | | | | | | | | | | | | JC | Cerritos College (Norwalk, CA) |
| 2006 | 44 | | 1323 | FrRnd | 19 | Marlins | T.J. Forrest (minors) | | | | | | | | | | | | | HS | Haughton HS (Haughton, LA) |
| 2006 | 44 | | 1327 | FrRnd | 23 | Braves | Kristopher Cichoski (minors) | | | | | | | | | | | | | JC | College of Southern Nevada (Henderson, NV) |
| 2006 | 44 | | 1328 | FrRnd | 24 | Indians | Brad Reid (minors) | | | | | | | | | | | | | HS | Decatur HS (Decatur, WA) |
| 2006 | 44 | | 1329 | FrRnd | 25 | Angels | Lou Green (minors) | | | | | | | | | | | | | JC | Chipola College (Marianna, FL) |
| 2006 | 44 | | 1330 | FrRnd | 26 | Red Sox | Drew Leary (minors) | | | | | | | | | | | | | HS | Sierra Vista HS (Las Vegas, NV) |
| 2006 | 44 | | 1332 | FrRnd | 28 | White Sox | Andrew Fernandez (minors) | | | | | | | | | | | | | HS | Hialeah HS (Hialeah, FL) |
| 2006 | 45 | | 1334 | FrRnd | 1 | Royals | Eric Martinez (minors) | | | | | | | | | | | | | JC | Southwestern College (Chula Vista, CA) |
| 2006 | 45 | | 1335 | FrRnd | 2 | Rockies | James Manning (minors) | | | | | | | | | | | | | JC | Wallace State Community College (Hanceville) (Hanceville, AL) |
| 2006 | 45 | | 1336 | FrRnd | 3 | Devil Rays | Chris Wilson (minors) | | | | | | | | | | | | | JC | Trinidad State Junior College (Trinidad, CO) |
| 2006 | 45 | | 1343 | FrRnd | 10 | Giants | Matt Speake (minors) | | | | | | | | | | | | | JC | New Mexico Junior College (Hobbs, NM) |
| 2006 | 45 | | 1348 | FrRnd | 15 | Nationals | Adam Kramer (minors) | | | | | | | | | | | | | JC | New Mexico Junior College (Hobbs, NM) |
| 2006 | 45 | | 1351 | FrRnd | 18 | Mets | William Pender (minors) | | | | | | | | | | | | | JC | Gulf Coast Community College (Panama City, FL) |
| 2006 | 45 | | 1353 | FrRnd | 20 | Twins | Brandon Trodick (minors) | | | | | | | | | | | | | JC | College of Southern Nevada (Henderson, NV) |
| 2006 | 45 | | 1356 | FrRnd | 23 | Braves | Mason Tobin (minors) | -0.1 | 4 | 0 | 0 | | | 4 | 0 | 0 | 6.75 | 1.88 | 0 | JC | Western Nevada College (Carson City, NV) |
| 2006 | 45 | | 1359 | FrRnd | 26 | Red Sox | Jake McCarter (minors) | | | | | | | | | | | | | 4Yr | University of Alabama (Tuscaloosa, AL) |
| 2006 | 45 | | 1360 | FrRnd | 27 | Yankees | Nathan Albert (minors) | | | | | | | | | | | | | JC | Bakersfield College (Bakersfield, CA) |
| 2006 | 45 | | 1362 | FrRnd | 29 | Cardinals | John Goodman (minors) | | | | | | | | | | | | | 4Yr | Georgia Institute of Technology (Atlanta, GA) |
| 2006 | 46 | | 1363 | FrRnd | 1 | Royals | Chase Lehr (minors) | | | | | | | | | | | | | HS | Centennial HS (Peoria, AZ) |
| 2006 | 46 | | 1367 | FrRnd | 5 | Mariners | Robbie Dominguez (minors) | | | | | | | | | | | | | JC | Cerritos College (Norwalk, CA) |
| 2006 | 46 | | 1368 | FrRnd | 6 | Tigers | Kent Williamson (minors) | | | | | | | | | | | | | JC | Cowley County Community College (Arkansas City, KS) |
| 2006 | 46 | | 1370 | FrRnd | 8 | Reds | Jordan Tiegs (minors) | | | | | | | | | | | | | JC | Sauk Valley Community College (Dixon, IL) |
| 2006 | 46 | | 1373 | FrRnd | 11 | Diamondbacks | Rene Garcia (minors) | | | | | | | | | | | | | JC | Pima Community College (Tucson, AZ) |
| 2006 | 46 | | 1379 | FrRnd | 17 | Mets | Kyle Johnson (minors) | | | | | | | | | | | | | 4Yr | Chapman University (Orange, CA) |
| 2006 | 46 | | 1384 | FrRnd | 22 | Braves | Tyler Musselwhite (minors) | | | | | | | | | | | | | JC | Chipola College (Marianna, FL) |
| 2006 | 46 | | 1385 | FrRnd | 23 | Indians | Daniel Miltenberger (minors) | | | | | | | | | | | | | 4Yr | University of California, Los Angeles (Los Angeles, CA) |
| 2006 | 46 | | 1388 | FrRnd | 26 | Yankees | Jeff Ludlow (minors) | | | | | | | | | | | | | HS | Palm Harbor University HS (Palm Harbor, FL) |
| 2006 | 46 | | 1390 | FrRnd | 28 | Cardinals | Robert Woodard (minors) | | | | | | | | | | | | | 4Yr | University of North Carolina at Chapel Hill (Chapel Hill, NC) |
| 2006 | 47 | | 1392 | FrRnd | 2 | Rockies | Justin Miller (minors) | | | | | | | | | | | | | JC | Bakersfield College (Bakersfield, CA) |
| 2006 | 47 | | 1396 | FrRnd | 6 | Tigers | Alec Shepherd (minors) | | | | | | | | | | | | | JC | South Mountain Community College (Phoenix, AZ) |
| 2006 | 47 | | 1401 | FrRnd | 11 | Diamondbacks | David Mixon (minors) | | | | | | | | | | | | | 4Yr | University of Louisiana at Monroe (Monroe, LA) |
| 2006 | 47 | | 1403 | FrRnd | 13 | Cubs | Andrew McCormick (minors) | | | | | | | | | | | | | 4Yr | Pikeville College (Pikeville, KY) |
| 2006 | 47 | | 1406 | FrRnd | 16 | Brewers | Matt Coburn (minors) | | | | | | | | | | | | | JC | San Jacinto College (Pasadena, TX) |
| 2006 | 47 | | 1408 | FrRnd | 18 | Marlins | Brooks Martin (minors) | | | | | | | | | | | | | HS | Streator Township HS (Streator, IL) |
| 2006 | 47 | | 1412 | FrRnd | 22 | Braves | John Kessick (minors) | | | | | | | | | | | | | JC | Lake Michigan CC (Benton Harbor, MI) |
| 2006 | 47 | | 1414 | FrRnd | 24 | Angels | Jon Plefka (minors) | | | | | | | | | | | | | 4Yr | Texas Tech University (Lubbock, TX) |
| 2006 | 48 | | 1420 | FrRnd | 2 | Rockies | Jesus Cebollero (minors) | | | | | | | | | | | | | HS | Puerto Rico Baseball Academy (Gurabo, PR) |
| 2006 | 48 | | 1422 | FrRnd | 4 | Pirates | Kenneth Wieda (minors) | | | | | | | | | | | | | JC | Vernon College (Vernon, TX) |
| 2006 | 48 | | 1424 | FrRnd | 6 | Tigers | Matt McDonald (minors) | | | | | | | | | | | | | JC | Ulster CC (Stone Ridge, NY) |
| 2006 | 48 | | 1427 | FrRnd | 9 | Orioles | Jason Mills (minors) | | | | | | | | | | | | | 4Yr | George Mason University (Fairfax, VA) |
| 2006 | 48 | | 1429 | FrRnd | 11 | Diamondbacks | Mike Solbach (minors) | | | | | | | | | | | | | 4Yr | Liberty University (Lynchburg, VA) |
| 2006 | 48 | | 1430 | FrRnd | 12 | Rangers | Rylan Ostrosky (minors) | | | | | | | | | | | | | JC | Lethbridge CC (Lethbridge, AB) |
| 2006 | 48 | | 1431 | FrRnd | 13 | Cubs | Kenneth Goodline (minors) | | | | | | | | | | | | | HS | North Monterey County HS (Castroville, CA) |
| 2006 | 48 | | 1434 | FrRnd | 16 | Brewers | Brandon Owens (minors) | | | | | | | | | | | | | HS | Heritage HS (Heritage, GA) |
| 2006 | 48 | | 1435 | FrRnd | 17 | Mets | Jonathan Koller (minors) | | | | | | | | | | | | | 4Yr | Oregon State University (Corvallis, OR) |
| 2006 | 48 | | 1437 | FrRnd | 19 | Twins | Stephen Vento (minors) | | | | | | | | | | | | | JC | Palm Beach Community College (Lake Worth, FL) |
| 2006 | 48 | | 1441 | FrRnd | 23 | Indians | Travis Turek (minors) | | | | | | | | | | | | | JC | Santa Barbara City College (Santa Barbara, CA) |
| 2006 | 48 | | 1442 | FrRnd | 24 | Angels | Abraham Gonzalez (minors) | | | | | | | | | | | | | HS | Coachella Valley HS (Coachella, CA) |
| 2006 | 48 | | 1443 | FrRnd | 25 | Red Sox | Josh Papelbon (minors) | | | | | | | | | | | | | 4Yr | University of North Florida (Jacksonville, FL) |
| 2006 | 48 | | 1444 | FrRnd | 26 | Yankees | Jeffrey Loveys (minors) | | | | | | | | | | | | | 4Yr | Ball State University (Muncie, IN) |
| 2006 | 49 | | 1448 | FrRnd | 2 | Rockies | Paul Dickey (minors) | | | | | | | | | | | | | JC | Lower Columbia College (Longview, WA) |
| 2006 | 49 | | 1449 | FrRnd | 3 | Devil Rays | Ryan Fraser (minors) | | | | | | | | | | | | | HS | Walker Valley HS (Cleveland, TN) |
| 2006 | 49 | | 1450 | FrRnd | 4 | Pirates | Carson Middleton (minors) | | | | | | | | | | | | | HS | Lindale HS (Lindale, TX) |
| 2006 | 49 | | 1451 | FrRnd | 5 | Mariners | Ryne Tacker (minors) | | | | | | | | | | | | | 4Yr | Rice University (Houston, TX) |
| 2006 | 49 | | 1455 | FrRnd | 9 | Orioles | Dan Watson (minors) | | | | | | | | | | | | | HS | Manatee HS (Bradenton, FL) |
| 2006 | 49 | | 1460 | FrRnd | 14 | Blue Jays | Brad Cuthbertson (minors) | | | | | | | | | | | | | JC | Midland JC (Midland, TX) |
| 2006 | 49 | | 1469 | FrRnd | 23 | Indians | Ryan Mottern (minors) | | | | | | | | | | | | | 4Yr | University of Oklahoma (Norman, OK) |
| 2006 | 49 | | 1471 | FrRnd | 25 | Red Sox | P.J. Thomas (minors) | | | | | | | | | | | | | JC | Wabash Valley College (Mount Carmel, IL) |
| 2006 | 50 | | 1481 | FrRnd | 7 | Dodgers | Kurt Benton (minors) | | | | | | | | | | | | | HS | West Stanley HS (Oakboro, NC) |
| 2006 | 50 | | 1485 | FrRnd | 11 | Diamondbacks | Kendal Volz (minors) | | | | | | | | | | | | | HS | Smithson Valley HS (Spring Branch, TX) |
| 2006 | 50 | | 1489 | FrRnd | 15 | Nationals | J.J. Pannell (minors) | | | | | | | | | | | | | 4Yr | George Mason University (Fairfax, VA) |
| 2006 | 50 | | 1499 | FrRnd | 25 | Red Sox | Darrell Fisherbaugh (minors) | | | | | | | | | | | | | 4Yr | University of Hawaii at Manoa (Honolulu, HI) |
| 2006 | 50 | | 1502 | FrRnd | 28 | Cardinals | Charles Matthews (minors) | | | | | | | | | | | | | HS | Athens Christian HS (Athens, GA) |